CF834136

Overview
NameCF834136
Unique NameCF834136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834136_ssr169 microsatellite CF834136_ssr169:169..182. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834136_ssr138 microsatellite CF834136_ssr138:138..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDOA_PANTR (Fructose-bisphosphate aldolase A OS=Pan troglodytes GN=ALDOA PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGES-EEAKKGMFVRGYTY 544
            +K S E IA  T+T L+R VPPAV GI FLSGGQSE EA++NLNA+N+ P   PW ++FSY RALQ + LK W G+ EN +AAQ+  + RA ANSLA  GKY+  G++   A + +FV  + Y
Sbjct:  242 QKFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFVSNHAY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDOA_HUMAN (Fructose-bisphosphate aldolase A OS=Homo sapiens GN=ALDOA PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.946e-27
Identity = 65/123 (52.85%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGES-EEAKKGMFVRGYTY 544
            +K S E IA  T+T L+R VPPAV GI FLSGGQSE EA++NLNA+N+ P   PW ++FSY RALQ + LK W G+ EN +AAQ+  + RA ANSLA  GKY+  G++   A + +FV  + Y
Sbjct:  242 QKFSHEEIAMATVTALRRTVPPAVTGITFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFVSNHAY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF2_PEA (Fructose-bisphosphate aldolase, cytoplasmic isozyme 2 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 64/122 (52.46%), Postives = 83/122 (68.03%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ--APNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKY-SAEGESEEAKKGMFVRGYTY 544
            K +PE IA++T+  L+R VP AVP ++FLSGGQSE EA++NLNA+NQ     PW +SFS+ RALQ + LK W G+ EN +AAQ +LL RAKANS A LG Y  A      A + + V+ Y Y
Sbjct:  238 KVAPEVIAEHTVRALQRTVPAAVPAVVFLSGGQSEEEASVNLNAINQIKGKKPWTLSFSFGRALQQSTLKAWGGKTENVKAAQDALLTRAKANSEATLGTYKGASNLGAGASESLHVKDYKY 359          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDOB_DANRE (Fructose-bisphosphate aldolase B OS=Danio rerio GN=aldob PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.154e-27
Identity = 63/123 (51.22%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAK-KGMFVRGYTY 544
            +K +P  +A  T+T L+R VP AVPGI FLSGGQSE EA+LNLNAMNQ     PW +SFSY RALQ + L  W+G+  N +A+Q + + RAK NSLA  G+Y   G++ +A  + +F   YTY
Sbjct:  242 KKYTPLEVAMATVTALRRTVPAAVPGICFLSGGQSEEEASLNLNAMNQLSLHRPWKLSFSYGRALQASALSAWKGQAANKKASQDAFVTRAKINSLASKGEYKPSGQAGQASTQSLFTASYTY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_ARATH (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Arabidopsis thaliana GN=At4g26520 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 65/123 (52.85%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYS--AEGESEEAKKGMFVRGYTY 544
            K +PE IA+YT+T L+R VPPA+PGI+FLSG Q E +ATLNLNAMN+     PW ++FS+  ALQ + +K W G+PEN   AQ   L R KAN  A LGKY+  A G+S  A + + V GY Y
Sbjct:  237 KVAPELIAEYTVTALRRTVPPAIPGIVFLSGIQREEQATLNLNAMNKLDVLKPWTLTFSFGGALQQSAIKAWAGKPENVAKAQAKFLTRCKANKDATLGKYTGWASGDS-AAFENLVVIGYRY 358          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDOA_RABIT (Fructose-bisphosphate aldolase A OS=Oryctolagus cuniculus GN=ALDOA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGES-EEAKKGMFVRGYTY 544
            +K S E IA  T+T L+R VPPAV G+ FLSGGQSE EA++NLNA+N+ P   PW ++FSY RALQ + LK W G+ EN +AAQ+  + RA ANSLA  GKY+  G++   A + +F+  + Y
Sbjct:  242 QKYSHEEIAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLNAINKCPLLKPWALTFSYGRALQASALKAWGGKKENLKAAQEEYVKRALANSLACQGKYTPSGQAGAAASESLFISNHAY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_PLAFA (Fructose-bisphosphate aldolase OS=Plasmodium falciparum PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            K + + +   T+  L+R VPPA+PG++FLSGGQSE EA++NLN++N   P+PW ++FSY RALQ +VL TWQG+ EN   A++ LL RA+ANSLA  GKY      E A   ++ + Y Y
Sbjct:  250 KTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGENAGASLYEKKYVY 369          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_PLAF7 (Fructose-bisphosphate aldolase OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0425 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 59/120 (49.17%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            K + + +   T+  L+R VPPA+PG++FLSGGQSE EA++NLN++N   P+PW ++FSY RALQ +VL TWQG+ EN   A++ LL RA+ANSLA  GKY      E A   ++ + Y Y
Sbjct:  250 KTTTQDVGFLTVRTLRRTVPPALPGVVFLSGGQSEEEASVNLNSINALGPHPWALTFSYGRALQASVLNTWQGKKENVAKAREVLLQRAEANSLATYGKYKGGAGGENAGASLYEKKYVY 369          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF2_LAMJA (Fructose-bisphosphate aldolase, non-muscle type OS=Lampetra japonica PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.791e-27
Identity = 64/122 (52.46%), Postives = 79/122 (64.75%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGES-EEAKKGMFVRGYTY 544
            + SP+ +A  T+T L+R VP AVPGI FLSGGQSE +A+LNLNA+NQ P   PW +SFSY RALQ +VLK W G P N  AA+K    RA  N LA  GKY   G S   A + +F+  + Y
Sbjct:  243 RCSPQEVAMATVTALRRTVPSAVPGITFLSGGQSEEDASLNLNAINQLPLERPWALSFSYGRALQASVLKAWAGAPANIPAAKKEFEKRAAINGLAAQGKYVPAGSSGSAASESLFIANHNY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF2_PLABA (Fructose-bisphosphate aldolase 2 OS=Plasmodium berghei (strain Anka) GN=ALDO2 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.148e-26
Identity = 59/121 (48.76%), Postives = 81/121 (66.94%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAKKGMFVRGYTY 544
            EK   + I  +T+  L+R VPPA+PG+ FLSGGQSE +A++NLN++N   P+PW ++FSY RALQ +VL TWQG+ EN   A++ LL RA+ANSLA  GKY        A   ++ + Y Y
Sbjct:  238 EKTKTDDIGFFTVRTLRRTVPPALPGVAFLSGGQSEEDASINLNSINVLGPHPWALTFSYGRALQASVLNTWQGKKENVAKARRVLLQRAEANSLATYGKYKGGAGGSTAGASLYEKKYVY 358          
The following BLAST results are available for this feature:
BLAST of CF834136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ALDOA_PANTR3.946e-2752.85Fructose-bisphosphate aldolase A OS=Pan troglodyte... [more]
ALDOA_HUMAN3.946e-2752.85Fructose-bisphosphate aldolase A OS=Homo sapiens G... [more]
ALF2_PEA5.154e-2752.46Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALDOB_DANRE5.154e-2751.22Fructose-bisphosphate aldolase B OS=Danio rerio GN... [more]
ALF_ARATH6.731e-2752.85Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
ALDOA_RABIT6.731e-2751.22Fructose-bisphosphate aldolase A OS=Oryctolagus cu... [more]
ALF_PLAFA8.791e-2749.17Fructose-bisphosphate aldolase OS=Plasmodium falci... [more]
ALF_PLAF78.791e-2749.17Fructose-bisphosphate aldolase OS=Plasmodium falci... [more]
ALF2_LAMJA8.791e-2752.46Fructose-bisphosphate aldolase, non-muscle type OS... [more]
ALF2_PLABA1.148e-2648.76Fructose-bisphosphate aldolase 2 OS=Plasmodium ber... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834136 ID=CF834136; Name=CF834136; organism=Citrus sinensis; type=EST; length=723bp
CAGAGAAGAAAATTCTCTCACTTTGAAATCCCCATCTTCCCATTTATTTT
TCCGCCACTTTCTCGGGAAAAATCGCTGTTACAGCATTGTTTGGCAACTT
TTATTACGTTGACTCTCAAGAGATCTGAGGAGGCGGCTTATTATTATTAT
TATTATTATTATTTTAGACTCTCTCTCTCTCTCGGAGAAGGCCTCTCCAG
AGACCATTGCTAAATATACACTTACAATGCTCAAGAGGAGAGTACCCCCT
GCAGTCCCAGGAATCATGTTTTTGTCTGGAGGACAATCAGAAGTGGAAGC
AACATTGAACTTGAATGCGATGAACCAAGCCCCCAACCCCTGGCACGTGT
CCTTTTCTTATGCCCGGGCGCTTCAGAACACTGTTCTTAAGACATGGCAA
GGTCGTCCTGAGAATACTGAAGCTGCACAAAAGTCACTATTGGTGCGTGC
AAAGGCAAATTCCTTGGCGCAGCTTGGGAAGTATTCCGCAGAAGGTGAAA
GCGAGGAAGCCAAGAAAGGAATGTTTGTCAGGGGCTACACTTACTAAGCC
AATAATATACTATGCAGTTTGAGCTTGCCTGAGGCAACTCATGACACTTG
TGTCATTGTGCACTTGCTTTTGTTTTGGTTCCTTCCCTTTTTTTTAAAAT
TTTTTTGGGATACGGACAAGATTTCTATTAGAAGTTTTTTCATTTTCTTT
TATCCACCTAATAAATAGAGAGC
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