CF834136

Overview
NameCF834136
Unique NameCF834136
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834136_ssr169 microsatellite CF834136_ssr169:169..182. BLAST: Citrus ESTs to Prunus persica proteins V1
CF834136_ssr138 microsatellite CF834136_ssr138:138..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDCA_DANRE (Fructose-bisphosphate aldolase C-A OS=Danio rerio GN=aldoca PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 57/110 (51.82%), Postives = 76/110 (69.09%), Query Frame = 2
Query:  188 KASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEA 511
            K S E +A  T+T L+R VPPAV G+ FLSGGQSE EA++NL+A+N      PW ++FS+ RALQ + LKTW+G+ EN  AA +  + RA+ NSLA  GKY+  G+S  A
Sbjct:  243 KYSAEEVAMATVTALRRTVPPAVTGVTFLSGGQSEEEASINLSAINNCRLVKPWALTFSFGRALQASALKTWRGQRENEAAATEEFIKRAEINSLASQGKYTVCGDSSGA 352          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALDOB_RAT (Fructose-bisphosphate aldolase B OS=Rattus norvegicus GN=Aldob PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQA--PNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLLVRAKANSLAQLGKYSAEGESEEAK-KGMFVRGYTY 544
            +K +PE +A  T+T L R VP AVP I FLSGG SE +ATLNLNA+ +   P PW +SFSY RALQ + L  W G+  N +A Q++ + RA AN  A  G+Y   G S  A  + +F   YTY
Sbjct:  242 KKYTPEQVAMATVTALHRTVPAAVPSICFLSGGMSEEDATLNLNAIYRCPLPRPWKLSFSYGRALQASALAAWGGKAANKKATQEAFMKRAVANCQAAQGQYVHTGSSGAASTQSLFTASYTY 364          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFA (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa GN=XF_0826 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQA-PNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 484
            E+AS + +A+ T+  LK  VP  +PGI+FLSGGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LGK+
Sbjct:  231 EQASIDEVAESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQLDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF1_XYLFT (Probable fructose-bisphosphate aldolase class 1 OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=PD_1845 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.151e-18
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQ-APNPWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 484
            E+AS + +A+ T+  LK  VP  +PGI+FLSGGQ++ ++T +LNAMNQ  P PW +SFSY RA+Q   LK W Q    N   AQ+ +  RAK N LA LGK+
Sbjct:  231 EQASIDEVAESTVMCLKSTVPAILPGIVFLSGGQTDAQSTAHLNAMNQFDPLPWPLSFSYGRAMQQAALKLWSQDMKGNFAKAQQVVYERAKENGLAALGKW 332          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_LYMST (Fructose-bisphosphate aldolase (Fragment) OS=Lymnaea stagnalis PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.963e-18
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAP--NPWHVSFSYARALQNTVLKTWQGRPE 412
            +K +PE IA+ T+T L R VP AV GI FLSGGQSE +AT+NLNA+NQ P   PW ++FSY RALQ +VLK W G+ E
Sbjct:   23 KKYTPEDIARATVTALNRTVPAAVAGITFLSGGQSEEDATINLNAINQFPGRKPWPLTFSYGRALQASVLKAWGGKDE 100          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF1_XANCP (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas campestris pv. campestris GN=XCC3185 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.662e-17
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 484
            E+AS E +A+ T+  LK  VP  +PGI+FLSGGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LGK+
Sbjct:  231 EQASVEEVAESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWSKDMTGNYAKAQQIIYERAKENGLAALGKW 332          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF1_XANAC (Probable fructose-bisphosphate aldolase class 1 OS=Xanthomonas axonopodis pv. citri GN=XAC3344 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 49/102 (48.04%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMNQAPN-PWHVSFSYARALQNTVLKTW-QGRPENTEAAQKSLLVRAKANSLAQLGKY 484
            E+AS E +A+ T+  LK  VP  +PGI+FLSGGQ++ ++T +LN M+Q  N PW +SFSY RA+Q   LK W +    N   AQ+ +  RAK N LA LGK+
Sbjct:  231 EQASIEEVAESTVMCLKSTVPAILPGIVFLSGGQTDEQSTAHLNEMHQLGNLPWPLSFSYGRAMQQAALKLWAKDMTGNFAKAQQVIYERAKENGLAALGKW 332          
BLAST of CF834136 vs. ExPASy Swiss-Prot
Match: ALF_ENCCU (Fructose-bisphosphate aldolase OS=Encephalitozoon cuniculi GN=ECU01_0240 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.115e-13
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  185 EKASPETIAKYTLTMLKRRVPPAVPGIMFLSGGQSEVEATLNLNAMN--QAPNPWHVSFSYARALQNTVLKTWQGRPENTEAAQKSLL 442
            EK +P+ +A +TL  L   +P  +PGI+FLSGG    +A   LNA+N  +    W +SFS+ARAL + VL+TW+G   N E AQK LL
Sbjct:  233 EKYTPKKVATFTLRALLSTIPCGIPGIVFLSGGHGSEDAIGFLNAINMERGCRTWSLSFSFARALTDGVLETWRGDDSNIEEAQKILL 320          
The following BLAST results are available for this feature:
BLAST of CF834136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
ALDCA_DANRE1.188e-2351.82Fructose-bisphosphate aldolase C-A OS=Danio rerio ... [more]
ALDOB_RAT5.896e-2347.97Fructose-bisphosphate aldolase B OS=Rattus norvegi... [more]
ALF1_XYLFA8.811e-1950.00Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XYLFT1.151e-1850.00Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF_LYMST1.963e-1860.26Fructose-bisphosphate aldolase (Fragment) OS=Lymna... [more]
ALF1_XANCP1.662e-1748.04Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF1_XANAC2.170e-1748.04Probable fructose-bisphosphate aldolase class 1 OS... [more]
ALF_ENCCU1.115e-1346.59Fructose-bisphosphate aldolase OS=Encephalitozoon ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834136 ID=CF834136; Name=CF834136; organism=Citrus sinensis; type=EST; length=723bp
CAGAGAAGAAAATTCTCTCACTTTGAAATCCCCATCTTCCCATTTATTTT
TCCGCCACTTTCTCGGGAAAAATCGCTGTTACAGCATTGTTTGGCAACTT
TTATTACGTTGACTCTCAAGAGATCTGAGGAGGCGGCTTATTATTATTAT
TATTATTATTATTTTAGACTCTCTCTCTCTCTCGGAGAAGGCCTCTCCAG
AGACCATTGCTAAATATACACTTACAATGCTCAAGAGGAGAGTACCCCCT
GCAGTCCCAGGAATCATGTTTTTGTCTGGAGGACAATCAGAAGTGGAAGC
AACATTGAACTTGAATGCGATGAACCAAGCCCCCAACCCCTGGCACGTGT
CCTTTTCTTATGCCCGGGCGCTTCAGAACACTGTTCTTAAGACATGGCAA
GGTCGTCCTGAGAATACTGAAGCTGCACAAAAGTCACTATTGGTGCGTGC
AAAGGCAAATTCCTTGGCGCAGCTTGGGAAGTATTCCGCAGAAGGTGAAA
GCGAGGAAGCCAAGAAAGGAATGTTTGTCAGGGGCTACACTTACTAAGCC
AATAATATACTATGCAGTTTGAGCTTGCCTGAGGCAACTCATGACACTTG
TGTCATTGTGCACTTGCTTTTGTTTTGGTTCCTTCCCTTTTTTTTAAAAT
TTTTTTGGGATACGGACAAGATTTCTATTAGAAGTTTTTTCATTTTCTTT
TATCCACCTAATAAATAGAGAGC
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