CF834140

Overview
NameCF834140
Unique NameCF834140
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            MS+LVTG AG++G+H  L+L +RGD VV LDN +N    S+ +  K  L        EGD+ D   L  +F A   + V+H A    V  + + P  Y  +N+ G + LLE  +SA      +++SS++V
Sbjct:    1 MSILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEK--LTGKTATFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVN-QFIFSSSATV 127          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 46/130 (35.38%), Postives = 74/130 (56.92%), Query Frame = 2
Query:  404 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK-ALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            SVLVTG AG++G+H  L L + G   V +DN++N    SL++ +K A  N + +   + D+ D   L K+F    F  V+H A    V  +++ P  Y ++NI G VTLLE       + ++V++SS++V
Sbjct:    4 SVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCK-NLVFSSSATV 132          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.883e-12
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            MS+L+TG AG++G+H  L L ++G  VV LDN  N    SL +  K        +   GDI D   L  +F +     V+H A    V  +++ P  Y  +N+ G +TLLE    AN +  ++++SS++V
Sbjct:    1 MSILITGGAGYIGSHTVLTLLEQGRNVVVLDNLINSSAESLARVSKICGRKPNFY--HGDILDRSCLKLIFSSHKIDSVIHFAGLKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVK-KLIFSSSATV 127          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12
Identity = 45/130 (34.62%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M++LVTG AG++G+H  + L   G  VV LDN  N    SL++ ++        +  EGDI D  LL K+F       V+H A    V  ++Q P  Y  +N+AG + L++  K A    + V++SS++V
Sbjct:    1 MAILVTGGAGYIGSHTVVELLNVGKEVVVLDNLCNSSPKSLERVKQITGKEAKFY--EGDILDRALLQKIFAENEINSVIHFAGLKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVW-NFVFSSSATV 127          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE1_PEA (UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 42/135 (31.11%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  392 SGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNN--HGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            +    +LVTG+AGF+GTH  + L   G  V  +DNF+N    ++++ R+ + +N    +    GD+ +   L KLF    F  V+H A    V  +++NP  Y  +N+ G + L E     N +  +V++SS++V
Sbjct:    3 ASSQKILVTGSAGFIGTHTVVQLLNNGFNVSIIDNFDNSVMEAVERVREVVGSNLSQNLEFTLGDLRNKDDLEKLFSKSKFDAVIHFAGLKAVGESVENPRRYFDNNLVGTINLYEVMAKHNCK-KMVFSSSATV 136          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 40/130 (30.77%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M++LVTG AG++G+H  + L      +V LDN +N  + SL++ ++  +    +   +GDI D  +L K+F       V+H A    V    +N +  + +N+ G + L+E    AN   +IV++SS++V
Sbjct:    1 MAILVTGGAGYIGSHTLVELLNENREIVVLDNLSNSSEVSLERVKQ--ITGKSVKFYQGDILDRDILRKIFAENQIESVIHFAGLKAVGETSENRYVTIKNNVTGSIVLVEEMLKANVN-TIVFSSSATV 127          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE2_ARATH (UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana GN=At4g10960 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 2
Query:  404 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHG--IFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            +VLV+G AG++G+H  L L   G  VV +DN +N    SL++ +K L   HG  +   + D+ D   L K+F    F  V+H A    V  +++ P  Y ++N+ G +TLLE   + +   ++V++SS++V
Sbjct:    5 NVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKK-LAAEHGERLSFHQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEV-MAQHGCKNLVFSSSATV 133          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  407 VLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            VLVTG AG++G+H  + L + G   V  DN +N    S+  AR  +L  H I   E D+ D K L K+F       V+H A    V  + Q P  Y H+NI G V LLE  +  N     V++SS++V
Sbjct:   14 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSV--ARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATV 138          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 44/130 (33.85%), Postives = 68/130 (52.31%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M++LVTG AG++G+H  + L      VV LDN  N    SL+  R A +    +   +GDI D  LL K+F       V+H A    V  ++Q P  Y  +N+ G + L++  K A    + V++SS++V
Sbjct:    1 MAILVTGGAGYIGSHTVVELLNANKDVVVLDNLCNSSPKSLE--RVAQITGKQVKFYQGDILDTALLQKIFAENQIQSVIHFAGLKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVW-NFVFSSSATV 127          
BLAST of CF834140 vs. ExPASy Swiss-Prot
Match: GALE_ECOLI (UDP-glucose 4-epimerase OS=Escherichia coli (strain K12) GN=galE PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 43/130 (33.08%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLLEACKSANPQPSIVWASSSSV 790
            M VLVTG +G++G+H  + L + G  V+ LDN  N    S+    + L   H  FV EGDI +  L+ ++    A   V+H A    V  ++Q P  Y  +N+ G + L+ A ++AN + + +++SS++V
Sbjct:    1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNS-KRSVLPVIERLGGKHPTFV-EGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATV 127          
The following BLAST results are available for this feature:
BLAST of CF834140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GALE_ERWAM1.179e-1436.15UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE3_ARATH8.450e-1335.38UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]
GALE_YEREN1.883e-1233.85UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_HAEIN4.194e-1234.62UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE1_PEA5.477e-1231.11UDP-glucose 4-epimerase OS=Pisum sativum GN=GALE P... [more]
GALE_PASHA2.081e-1130.77UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
GALE2_ARATH2.081e-1133.59UDP-glucose 4-epimerase 2 OS=Arabidopsis thaliana ... [more]
GAL10_YEAST2.081e-1137.50Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
GALE_PASMU2.718e-1133.85UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_ECOLI7.909e-1133.08UDP-glucose 4-epimerase OS=Escherichia coli (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04P24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834140 ID=CF834140; Name=CF834140; organism=Citrus sinensis; type=EST; length=792bp
CATCTATTACTCTTCACACCATTTCAATCCAATCCAAAACCAAATCCAAC
CCGGTTTCACCTTTCCTTCTAAACAAACAAACCAACCCAGAAAAGGGAAA
ATAATAAAGATTCGAAGATTCTAGAGAAAAATGCCGTCTTTAGAAGATGA
GCTGTTCCCGTCGACGCCGGGGAAATTCAAGATTGAAAGATCCAACACTA
TGAACCGCCAGTTTCACCGGTGTTTCACCTCAACGAGTACCATGTTCTTG
TGGGCTCTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGAGTTTTCAGTC
TTTTGTCGATTCCGGTAGCCGGTACTTTTCCGCTTCTTGGGGAGGTATCC
AGTGGGAGAAACATGTCAGGAGCTCCGCTCAGATCCATCGGTCTGGTGGG
ATGTCGGTGCTGGTTACCGGTGCAGCCGGTTTCGTTGGGACCCACGTGTC
TTTGGCTTTAAAGAAACGCGGAGACGGCGTCGTTGGACTCGACAATTTCA
ATAACTACTACGATCCCTCATTGAAGAAGGCGAGGAAGGCTTTGTTGAAC
AACCATGGCATTTTTGTAATTGAAGGTGATATCAATGACGCGAAATTATT
AGCCAAGCTCTTTGACGCTGTGGCTTTTACGCACGTGATGCATTTAGCGG
CTCAAGCCGGTGTTAGATACGCGATGCAGAATCCCCACTCGTACGTGCAC
AGCAATATCGCTGGCCTCGTCACGCTCCTTGAGGCTTGCAAATCAGCCAA
TCCTCAGCCGTCGATTGTGTGGGCCTCGTCGAGCTCAGTCTA
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