CF834144

Overview
NameCF834144
Unique NameCF834144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11071 contig Csv1_Contig11071:317..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834144 vs. ExPASy Swiss-Prot
Match: MDMC_STRMY (O-methyltransferase mdmC OS=Streptomyces mycarofaciens GN=mdmC PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.786e-20
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = -1
Query:  188 ALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNSYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRR 631
            A A+P  G+I+  DI+ +    G P  Q+AGV   ID R G A   L +L ++    G FD VFVDADK  Y++Y+++ + LV+ GG++  DNTL+ G  VA P A+  + +      V+ LN  L  D R++I  L++ADG+TL RR
Sbjct:   79 ARALPAGGRIVTCDISDKWPGIGAPFWQRAGVDGLIDLRIGDAARTLAEL-RERDGDGAFDLVFVDADKAGYLHYYEQALALVRPGGLVAIDNTLFFGR-VADPAADDPDTVA-----VRTLNDLLRDDERVDIALLTVADGITLARR 219          
BLAST of CF834144 vs. ExPASy Swiss-Prot
Match: CMTD1_HUMAN (Catechol-O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.179e-18
Identity = 52/149 (34.90%), Postives = 85/149 (57.05%), Query Frame = -1
Query:  185 ALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNSYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRRI 631
            ALA+P DG+++  ++  +  E G P+ ++A   HKID R  PAL  LD+L+   +  GTFD   VDADK +   Y++R ++L++ GG++     LW G V+  P  ++        + V+ LN+ +  D R+ I  L + DG+TL  +I
Sbjct:  121 ALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDV------AAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262          
BLAST of CF834144 vs. ExPASy Swiss-Prot
Match: CMTD1_MOUSE (Catechol-O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.476e-16
Identity = 53/150 (35.33%), Postives = 85/150 (56.67%), Query Frame = -1
Query:  185 ALAIPDDGKILALDITKEHYEKGLPIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNSYINYHKRLIELVKVGGVIGYDNTLWGGSVV-AQPDAELDEHILYLRDFVQELNKALAVDPRIEICQLSIADGVTLCRRI 631
            ALA+P+ G+++  ++  E  + G P+ ++A V  KID R  PAL  LD+L+   +  GTFD   VDADK +   Y++R ++L++ GGV+     LW G V+  QP  +  E        V+ LN+ +  D R+ I  L + DG++L  +I
Sbjct:  121 ALALPEAGRVVTCEVDAEPPKLGRPMWKQAEVEQKIDLRLQPALQTLDELLAAGEA-GTFDIAVVDADKENCTAYYERCLQLLRPGGVLAVLRVLWRGEVLQPQPRNKTVE-------CVRNLNERILRDARVYISLLPLDDGLSLAFKI 262          
The following BLAST results are available for this feature:
BLAST of CF834144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
MDMC_STRMY4.786e-2040.54O-methyltransferase mdmC OS=Streptomyces mycarofac... [more]
CMTD1_HUMAN1.179e-1834.90Catechol-O-methyltransferase domain-containing pro... [more]
CMTD1_MOUSE5.476e-1635.33Catechol-O-methyltransferase domain-containing pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834144 ID=CF834144; Name=CF834144; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTCACTTAAATATAACATTTATTGTTTAAAAAGTTATTAACT
TAAGAAAGACAATAATACATTTTTCCAAACACTCGTAAGTCTAATTTATT
TGTGGATTCTACGGTCATAACCACACATAGATTTAAAAGTTACGACACAA
CCAGCCTCATGAGTGAAAATTGAGAGGATCAGCCAATGCGGCGACATAAT
GTAACCCCATCAGCAATGGAGAGCTGGCAAATCTCAATCCTTGGATCAAC
GGCCAGGGCCTTGTTGAGTTCCTGCACAAAATCCCTCAAGTATAAGATAT
GCTCATCCAGTTCGGCATCAGGTTGAGCCACCACGGATCCACCCCACAAG
GTGTTGTCGTAGCCAATCACTCCCCCAACCTTCACAAGCTCAATAAGCCT
CTTGTGGTAATTAATGTAGCTATTCTTGTCAGCATCAACAAAGACGAAGT
CGAATGTCCCATGATATTTTTCGTCTTGGATCAATTGATCAAGAAGAGGA
AGAGCAGGGCCTTCTCTGAAGTCAATCTTGTGAGCAACACCAGCTTTTTG
AATTATAGGGAGACCCTTCTCGTAGTGTTCCTTGGTGATGTCCAGGGCCA
GTATCTTGCCATCGTCGGGAATGGCAAGGGC
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