CF834145

Overview
NameCF834145
Unique NameCF834145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834145_ssr531 microsatellite CF834145_ssr531:531..540. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig161 contig Csv1_Contig161:372..1172. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834145 vs. ExPASy Swiss-Prot
Match: ATPO_SORAR (ATP synthase subunit O, mitochondrial OS=Sorex araneus GN=ATP5O PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 38/124 (30.65%), Postives = 62/124 (50.00%), Query Frame = -2 
Query:  366 RVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 737
            +VK+I ++  + K S +T + + +LAENGRL N   I   F  +   H+GEV  TVT+                   L            DPSI+GG++V  G+K  DMS +++ +++ + +RE
Sbjct:   88 KVKSIGDLTAREKLSPITTNLINLLAENGRLNNTPGIISAFSTMMSVHRGEVPCTVTTASALPEATLSELKTVLQSFLSKNQVLKLEVKTDPSIMGGMIVRIGEKYVDMSARTKIQKLSKAMRE 211
[Close]
BLAST of CF834145 vs. ExPASy Swiss-Prot
Match: ATPO_PIG (ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 39/129 (30.23%), Postives = 66/129 (51.16%), Query Frame = -2 
Query:  366 VPAETRVKAINEICTQAKFSDVTKHFLVVLAENGRLRNLDTIAKRFVELTMAHKGEVKVTVTSVIXXXXXXXXXXXXXXXXXLXXXXXXXXXXXVDPSILGGLVVEFGQKVFDMSIKSRARQMERFLRE 752
            V    +VK+++++  + KFS +T + + +LAENGRL +   +   F  +   H+GEV  +VT+                   L           VDPSI+GG++V  G+K  DMS K++ +++ R +RE
Sbjct:   83 VKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMSVHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMGGMIVRIGEKYVDMSAKTKIQKLSRAMRE 211
The following BLAST results are available for this feature:
BLAST of CF834145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ATPO_SORAR1.245e-1130.65ATP synthase subunit O, mitochondrial OS=Sorex ara... [more]
ATPO_PIG1.245e-1130.23ATP synthase subunit O, mitochondrial OS=Sus scrof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834145 ID=CF834145; Name=CF834145; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTTTTTTTCATAAAAAGAGCTTTTGTCCTTGACCCTTTTAT
CATGTGCAGGACCGAGTAATTATTTGAACAAACAAATTATACCCTTAAAA
GATAATGGTCCGAACCGAAACCCAAACAAAAAATGTTGATGTCCATCAAA
ACCATTTGCCATGAAAGCAAAGTGATCAAGATGTGAATTTTATTTTGCCA
ATGATTCAATTCATTCAAAAATGGCGGAGCACAAGCAAACAGCATCAAAC
AAGAGCTTGAATGGTTCTTTTACTTCTTGGAGCGTTCCAGTTGTTGCATA
ATCATCTTAAAAATTTGCGCCCTGGGGCTGTGGCAGCCTTTTTAGAGGGT
GCCAAAATGAATGGGCTCACGTAGGAACCTCTCCATCTGCCGCGCCCTAG
ACTTAATGGACATGTCAAACACCTTTTGCCCAAACTCTACTACGAGCCCA
CCAAGAATGCTAGGATCAACCTTCTGTTCAACCTTGACTTTCTTCCCTTG
GCCAAGTGTCTCTTGCAGGGTCTCTTTCAACTCTCTCTCTTCTTCTGGGG
GAAGTGGAATAACGGATGTAACAGTAACTTTTACTTCGCCCTTGTGTGCC
ATGGTTAACTCCACAAACCTCTTAGCGATGGTGTCTAAGTTTCTAAGCCT
CCCATTCTCAGCCAAAACAACTAAGAAGTGCTTCGTAACATCTGAAAATT
TAGCCTGAGTACAGATTTCGTTAATGGCCTTAACTCTTGTCTCTGCAGGC
ACAGACAAGTCCTTTGTGAACTGAAAATATGTATCAGCCTTCTTTGAAGC
C
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