CF834148

Overview
NameCF834148
Unique NameCF834148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:240..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.308e-73
Identity = 126/188 (67.02%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   18 RHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            R + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DL+  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   68 RFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 273.478 bits (698), Expect = 6.494e-73
Identity = 122/188 (64.89%), Postives = 156/188 (82.98%), Query Frame = 3
Query:   18 RHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            R + VDGKVRTD TYPAGFMDV+SI KT ENFRL+YD KGRF +H + +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DL+  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:   68 RFIKVDGKVRTDITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 8.481e-73
Identity = 124/188 (65.96%), Postives = 155/188 (82.45%), Query Frame = 3
Query:   18 RHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            R + +DGKVRTD TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++L+  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   68 RFIKIDGKVRTDITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 8.481e-73
Identity = 125/188 (66.49%), Postives = 153/188 (81.38%), Query Frame = 3
Query:   18 RHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            R + +DGKVRTD TYP GFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DL+  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   68 RFIKIDGKVRTDTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 270.396 bits (690), Expect = 5.497e-72
Identity = 126/194 (64.95%), Postives = 155/194 (79.90%), Query Frame = 3
Query:    3 AILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 584
            AIL  RHV VDGKVRTD TYPAGFMDV+++  TNENFRL+YD KGRF +H + DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL   KITDFIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+  KP++SLPKGKGIKLSI EE  +R+
Sbjct:   63 AILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRRR 256          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 268.47 bits (685), Expect = 2.089e-71
Identity = 124/192 (64.58%), Postives = 156/192 (81.25%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            I+  R V VDGKVRTD TYPAG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:   64 IVMQRLVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.089e-71
Identity = 129/194 (66.49%), Postives = 154/194 (79.38%), Query Frame = 3
Query:    3 AILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 584
            AIL  R + VDGKVRTD+T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+L+ NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R+
Sbjct:   63 AILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRR 256          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.563e-71
Identity = 129/194 (66.49%), Postives = 154/194 (79.38%), Query Frame = 3
Query:    3 AILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 584
            AIL  R + VDGKVRTD+T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+L+ NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R+
Sbjct:   63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRR 256          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.563e-71
Identity = 129/194 (66.49%), Postives = 154/194 (79.38%), Query Frame = 3
Query:    3 AILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKRQ 584
            AIL  R + VDGKVRTD+T+P GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+L+ NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R+
Sbjct:   63 AILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRRR 256          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 267.314 bits (682), Expect = 4.654e-71
Identity = 120/188 (63.83%), Postives = 151/188 (80.32%), Query Frame = 3
Query:   18 RHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 581
            R + +DGKVR D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   68 RFIKIDGKVRVDVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
The following BLAST results are available for this feature:
BLAST of CF834148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RS4_XENTR1.308e-7367.0240S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_ICTPU6.494e-7364.8940S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_MONDO8.481e-7365.9640S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO8.481e-7366.4940S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4_YEAST5.497e-7264.9540S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_DROME2.089e-7164.5840S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4B_SCHPO2.089e-7166.4940S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO3.563e-7166.4940S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO3.563e-7166.4940S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4Y1_MACFU4.654e-7163.8340S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834148 ID=CF834148; Name=CF834148; organism=Citrus sinensis; type=EST; length=640bp
TTGCTATTCTCACGTTACGACATGTTCTTGTTGATGGGAAGGTTAGGACA
GATAATACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGAC
CAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCC
ATTCCCTCAAAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCA
GTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCG
TACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAAC
TTGACTTAAAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGG
AATATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGGGTTGGAATCAT
CAAGAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAG
ATGCCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATC
GGGAAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAA
GTTGTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCACGCTGCTG
CTTAAGCTTTTACAATGAATTTGGATACATTTTGCTGCTT
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