CF834148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19 Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 533 IL LVDGKVR D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N +DG + PL + ++ T+ + + E +I + + F+ G V VT G+N R G I++ ++ G + + I+D G F T F +GK KP +SLP Sbjct: 65 ILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18 Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 533 IL LVDG+VR D +P G MDVVSIP+T E++R+L + G+ LH + +EEA K ++R+ + + +N +DG + PL + ++ T+ + + E +I + + F+ G V VT G+N R G I++ ++ G + + I+D G F T F +G+ KP +SLP Sbjct: 65 ILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18 Identity = 52/183 (28.42%), Postives = 96/183 (52.46%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 530 I+ + +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L K E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 65 IIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18 Identity = 52/183 (28.42%), Postives = 96/183 (52.46%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 530 I+ + +L+DG R + +P G MDV+SIP+ NEN+ +L+D GR L K E+ KLCK+ + + G +N +DGR ++ + + K D++ + L E + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 65 IIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17 Identity = 53/169 (31.36%), Postives = 89/169 (52.66%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 506 I++++ +LVDGK R D + G MDV+SIP+ N+R++ D RL + E+K KL KV + + G + ++DGR +K D++ ++L + D ++FD G+ V+VT GR GR+G + +G I ++D E + R N+ +GK Sbjct: 65 IISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17 Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIK 551 VLVDGKVR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + E KI + VG++VMVT G++ G +G +K + + S + +F T VF IGK S P +G+K Sbjct: 67 VLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506 VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506 VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506 VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17 Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506 VLVDGKVR D YP G MD+VSIP + FR++ D RL + +EA +K ++ + + G +N DGR I K+ T+K++L I D G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231 The following BLAST results are available for this feature:
BLAST of CF834148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 96
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834148 ID=CF834148; Name=CF834148; organism=Citrus sinensis; type=EST; length=640bpback to top |