CF834148

Overview
NameCF834148
Unique NameCF834148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:240..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.424e-19
Identity = 63/182 (34.62%), Postives = 100/182 (54.95%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 533
            IL     LVDGKVR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +GK  KP +SLP
Sbjct:   65 ILNEGKFLVDGKVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 533
            IL     LVDG+VR D  +P G MDVVSIP+T E++R+L +  G+  LH + +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + + E +I + + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +G+  KP +SLP
Sbjct:   65 ILNEGKFLVDGRVRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 52/183 (28.42%), Postives = 96/183 (52.46%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 530
            I+ +  +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   K E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   65 IIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.797e-18
Identity = 52/183 (28.42%), Postives = 96/183 (52.46%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 530
            I+ +  +L+DG  R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   K E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L E  +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   65 IIQMGKILIDGVKRKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.737e-17
Identity = 53/169 (31.36%), Postives = 89/169 (52.66%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 506
            I++++ +LVDGK R D  +  G MDV+SIP+   N+R++ D     RL  +   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L    + D ++FD G+ V+VT GR  GR+G +      +G    I ++D    E + R    N+  +GK
Sbjct:   65 IISMKKILVDGKPRYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.268e-17
Identity = 59/176 (33.52%), Postives = 89/176 (50.57%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIK 551
            VLVDGKVR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L + E KI     + VG++VMVT G++ G +G +K  +  + S     +      +F T    VF IGK S      P  +G+K
Sbjct:   67 VLVDGKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506
            VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506
            VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506
            VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.869e-17
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 506
            VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   65 VLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
The following BLAST results are available for this feature:
BLAST of CF834148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RS4E_PYRHO2.424e-1934.6230S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_PYRAB2.052e-1833.5230S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METVS7.797e-1828.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA7.797e-1828.4230S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_KORCO1.737e-1731.3630S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_UNCMA2.268e-1733.5230S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_SULIY3.869e-1732.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN3.869e-1732.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM3.869e-1732.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL3.869e-1732.9330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834148 ID=CF834148; Name=CF834148; organism=Citrus sinensis; type=EST; length=640bp
TTGCTATTCTCACGTTACGACATGTTCTTGTTGATGGGAAGGTTAGGACA
GATAATACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGAC
CAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCC
ATTCCCTCAAAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCA
GTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCG
TACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAAC
TTGACTTAAAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGG
AATATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGGGTTGGAATCAT
CAAGAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAG
ATGCCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATC
GGGAAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAA
GTTGTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCACGCTGCTG
CTTAAGCTTTTACAATGAATTTGGATACATTTTGCTGCTT
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