CF834148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13 Identity = 50/167 (29.94%), Postives = 77/167 (46.11%), Query Frame = 3 Query: 21 HVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGS 512 +V VDGKVR D YP G MDV+ + NE +R++ D R + EA K+C++ + G +N +DGR I + +T + ++L++ K+ D+ V+ G N GR G + N + + I A EF T L + IGK S Sbjct: 64 YVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGKES 230
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13 Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 503 ILT V+VDGKV + GFMD +++ + ++ + YD KG+ + E KL +V+ + + G I+ +DG T+ IK D++ + + + +I D +KF GN V +TGG + G + IK+ E S E +H+ + F+T VF +G Sbjct: 60 ILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12 Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395 I++ +V +DG +R D +P G MDVV I T E +R++ D K + L + EEA KL +V + G ++ +DGR + + IK DT+ DL+ I I F +G +VT G N G G Sbjct: 60 IISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11 Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 500 VLVDG+ D +P G DV++IP+ NE +R+L D +G+ L + EEA K K +R V I Y T DGRT D K + + ++ KI + I + + G++ GR+G+IK K + I + G T L N+ + Sbjct: 71 VLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11 Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395 I++ ++ VDG VR D +P G MDVV I T E +R++ D + L + EA K +V G ++ +DGR + P + IK DT+ DL+ I + +G + +VT G N G VG Sbjct: 60 IISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11 Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 3 Query: 6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395 I++ ++ VDG VR D +P G MDV+ I T E +R++ D + L + EA KL +V G ++ +DGR I PD IK DTI DL+ I I +G + +VT G N G G Sbjct: 60 IVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192 The following BLAST results are available for this feature:
BLAST of CF834148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 96
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834148 ID=CF834148; Name=CF834148; organism=Citrus sinensis; type=EST; length=640bpback to top |