CF834148

Overview
NameCF834148
Unique NameCF834148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:240..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.595e-13
Identity = 50/167 (29.94%), Postives = 77/167 (46.11%), Query Frame = 3
Query:   21 HVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDT---IKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGS 512
            +V VDGKVR D  YP G MDV+ +   NE +R++ D     R   +   EA  K+C++      + G   +N +DGR I       +  +T   + ++L++ K+ D+        V+   G N GR G + N  +     + I    A   EF T L  +  IGK S
Sbjct:   64 YVKVDGKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVKAGKIQLNLHDGRNIIVDQDEGRKYETLGSVVVNLEDGKLMDYYPMQPNQYVIAFNGVNVGRHGTLINWVRSFRKRDAIATVKAKDSEFRTVLNYLLVIGKES 230          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 51/167 (30.54%), Postives = 85/167 (50.90%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIG 503
            ILT   V+VDGKV  +     GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +     F+T    VF +G
Sbjct:   60 ILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEG----FSTVSSYVFVMG 220          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRIL (30S ribosomal protein S4e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.349e-12
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395
            I++  +V +DG +R D  +P G MDVV I  T E +R++ D K  + L  +  EEA  KL +V      + G   ++ +DGR +     +   IK  DT+  DL+   I   I F +G   +VT G N G  G
Sbjct:   60 IISRGYVKIDGVIRKDYKFPVGLMDVVEIVPTGEIYRVVPDEKKYYALIPISSEEATLKLLRVEGKTAVKGGKLQLHFHDGRNLIVSQDVGRHIKTFDTVLYDLQNKNIKMHIPFKLGAYAVVTRGGNVGFSG 192          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_NANEQ (30S ribosomal protein S4e OS=Nanoarchaeum equitans GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.090e-11
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 3
Query:   24 VLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCK-VRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTI 500
            VLVDG+   D  +P G  DV++IP+ NE +R+L D +G+  L  +  EEA  K  K +R V      I Y  T DGRT    D   K +  +  ++   KI + I  +      +  G++ GR+G+IK   K    +  I   +  G    T L N+  +
Sbjct:   71 VLVDGRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVRGGKIQYTLT-DGRTF-LGDNSYKTHYGVVYEIPNFKIREVIPLEKDRKAYIIRGKHTGRIGVIKEVIKTDMPWPNIVRLEVAGEVGETWLDNIIPV 228          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395
            I++  ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DL+   I   +   +G + +VT G N G VG
Sbjct:   60 IISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CF834148 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 46/133 (34.59%), Postives = 65/133 (48.87%), Query Frame = 3
Query:    6 ILTLRHVLVDGKVRTDNTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLKDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLKENKITDFIKFDVGNIVMVTGGRNRGRVG 395
            I++  ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DL+   I   I   +G + +VT G N G  G
Sbjct:   60 IVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
The following BLAST results are available for this feature:
BLAST of CF834148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
RS4E_CALMQ2.595e-1329.9430S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_PICTO7.552e-1330.5430S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_PYRIL8.349e-1233.8330S ribosomal protein S4e OS=Pyrobaculum islandicu... [more]
RS4E_NANEQ1.090e-1131.2530S ribosomal protein S4e OS=Nanoarchaeum equitans... [more]
RS4E_PYRCJ9.231e-1132.3330S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_PYRAR9.231e-1134.5930S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834148 ID=CF834148; Name=CF834148; organism=Citrus sinensis; type=EST; length=640bp
TTGCTATTCTCACGTTACGACATGTTCTTGTTGATGGGAAGGTTAGGACA
GATAATACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGAC
CAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCC
ATTCCCTCAAAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCA
GTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCG
TACCATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAAC
TTGACTTAAAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGG
AATATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGGGTTGGAATCAT
CAAGAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAG
ATGCCCTTGGTCATGAGTTTGCAACTCGTCTAGGCAATGTGTTCACCATC
GGGAAGGGTTCAAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAA
GTTGTCCATCATTGAGGAAGCTAGGAAGAGACAGGCTGCCCACGCTGCTG
CTTAAGCTTTTACAATGAATTTGGATACATTTTGCTGCTT
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