CF834171

Overview
NameCF834171
Unique NameCF834171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1478 contig Csv1_Contig1478:25..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_SCHPO (Mitochondrial import inner membrane translocase subunit tim9 OS=Schizosaccharomyces pombe GN=tim9 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 34/80 (42.50%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNSQ 398
            +D L  +++  +  +++  QL++ L MY++L + CF+DCV DFT   L  +E  C  +CA+KFLKHS RVG RFA+ N++
Sbjct:    1 MDRLNVKEQEHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCADKFLKHSERVGQRFAEFNAK 80          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_DEBHA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Debaryomyces hansenii GN=TIM9 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 32/79 (40.51%), Postives = 53/79 (67.09%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +D L  +++     +++  Q++D +R+Y++L  +CF+DCV+DFT   L  +E  C  +C+EKFLKHS RVG RF + N+
Sbjct:    1 MDQLNVKEQQDFQQIVEQKQMKDFMRLYSNLVSKCFDDCVNDFTSNNLTTKETGCITKCSEKFLKHSERVGQRFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_CANAL (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida albicans GN=TIM9 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRF 380
            +D L  +++     +++  Q++D + +Y++L  RCF+DCV+DFT  +L  +E +C  +C+EKFLKHS RVG RF
Sbjct:    1 MDQLNVKEQQEFQQIVEQKQMKDFMNLYSNLVSRCFDDCVNDFTSNSLTSKETSCIAKCSEKFLKHSERVGQRF 74          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_ASPFU (Mitochondrial import inner membrane translocase subunit tim9 OS=Aspergillus fumigatus GN=tim9 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.334e-13
Identity = 32/79 (40.51%), Postives = 55/79 (69.62%), Query Frame = 3
Query:  159 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            +DGL   ++  +A+ ++  QL++ + MY+ L +RCF++CV+DFT K+L  +EE C MRC +K++K S R+  RF + N+
Sbjct:    1 MDGLTAAEQRELASRMERKQLKEFMTMYSKLVQRCFDNCVNDFTTKSLISREEGCIMRCVDKYMKASSRLNERFQEQNA 79          
BLAST of CF834171 vs. ExPASy Swiss-Prot
Match: TIM9_EMENI (Mitochondrial import inner membrane translocase subunit tim9 OS=Emericella nidulans GN=tim9 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.370e-12
Identity = 30/72 (41.67%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  180 DKARMAAMIDHLQLRDSLRMYNSLEERCFNDCVDDFTRKTLQKQEETCGMRCAEKFLKHSMRVGMRFAKLNS 395
            ++  +A  ++  Q+++ + MY+ L +RCF+DCV+DFT K+L  +EE C MRC +KF+K S R+  RF + N+
Sbjct:    8 EQRELANRMERKQMKEFMTMYSKLVQRCFDDCVNDFTTKSLISREEGCVMRCVDKFMKGSQRLNERFQEQNA 79          
The following BLAST results are available for this feature:
BLAST of CF834171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
TIM9_SCHPO1.238e-1442.50Mitochondrial import inner membrane translocase su... [more]
TIM9_DEBHA2.334e-1340.51Mitochondrial import inner membrane translocase su... [more]
TIM9_CANAL2.334e-1341.89Mitochondrial import inner membrane translocase su... [more]
TIM9_ASPFU2.334e-1340.51Mitochondrial import inner membrane translocase su... [more]
TIM9_EMENI3.370e-1241.67Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05A22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834171 ID=CF834171; Name=CF834171; organism=Citrus sinensis; type=EST; length=533bp
GAGGAAAGACCGTATACACGAGACGACAGCGGATTGGTGACTGAAGTATA
ACCCAGGAAAGAAAAGCCCTCTTTCCCAAAACCCTACCTCTGAGTTCTCA
GTTCAACAACATTCAACACAGAAAAGGAGCCGGAATGGACAAGAACATGT
TAGCTGGACTTGATGGTCTTCCCGAACAGGACAAGGCTAGAATGGCTGCC
ATGATCGACCATCTTCAATTACGGGACAGTTTGAGGATGTACAACTCCCT
TGAGGAGAGATGTTTCAACGATTGTGTGGACGACTTTACACGCAAGACCC
TACAGAAGCAAGAGGAGACCTGCGGCATGCGTTGTGCTGAGAAATTTCTG
AAGCACTCAATGCGCGTTGGCATGAGGTTTGCAAAACTCAATTCACAAGC
AGCTACACAAGAATAGTATCCCCAGACGACCATTAACGGCGCCAAGAAAC
CATTTGGTTTATTCCTGTAGAATTTCTTTTGGATCAAATTAGTGGCTATT
AATTTTCTGCTTTTGCCAAAAAAAAAAAAAAAA
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