CF834177

Overview
NameCF834177
Unique NameCF834177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_CANTR (40S ribosomal protein S0 OS=Candida tropicalis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.283e-60
Identity = 116/202 (57.43%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 687
            P        D +++LA  VHLG+KN     + YV+K R DG+ IIN+GKTWEK+ +AAR+I AI N  D+ V S+R +GQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL+ RG I     +W VM DL+FYR
Sbjct:    4 PASFDLTPEDAKLLLAGNVHLGSKNVQVHNKPYVYKTRPDGVNIINIGKTWEKIVLAARIIAAIPNANDVAVCSSRTFGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRSRGIIPDRTTEWSVMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_KLULA (40S ribosomal protein S0 OS=Kluyveromyces lactis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.622e-59
Identity = 112/202 (55.45%), Postives = 143/202 (70.79%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 687
            P        D Q++LAA VHLG KN     E YV+K R DG+ +IN+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLK+A +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NN+GKHSIG +++LLAR VL++RG +      W +M DL+FYR
Sbjct:    4 PSTFDLTSEDAQLLLAARVHLGAKNVQVHQEPYVYKARPDGVNVINVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKYAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALPDRTQPWAIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_PICGU (40S ribosomal protein S0 OS=Pichia guilliermondii GN=RPS0 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.119e-59
Identity = 116/202 (57.43%), Postives = 142/202 (70.30%), Query Frame = 1
Query:   85 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 687
            P        D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR I AI N  D+ V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVDI IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR
Sbjct:    4 PASFDLTAEDAKLLLAANVHLGSKNVIVHNKPYVYKTRPDGVNVINIGKTWEKIVLAARTIAAIPNAADVAVCSSRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALTDMDSPTDYVDIAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDRSTEWSVMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_DEBHA (40S ribosomal protein S0 OS=Debaryomyces hansenii GN=RPS0 PE=3 SV=3)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 112/193 (58.03%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRP-GHKWDVMVDLFFYR 687
            D +++LAA VHLG+KN     + YV+K R DG+ +IN+GKTWEK+ +AAR+I AI N  D+ V S R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+++TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WL+AR VL++RG I     +W VM DL+FYR
Sbjct:   13 DAKLLLAANVHLGSKNVQVHNKPYVYKTRPDGVNVINVGKTWEKIVLAARIIAAIPNAADVAVCSTRTFGQRAVLKFAAHTGATPIAGRFTPGNFTNYITRSFKEPRLVVVTDPRTDFQAIKESSYVNIPVIALTDMDSPSEYVDVAIPCNNKGKHSIGLIWWLVAREVLRLRGIIPDRTTEWSVMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAST (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae GN=RPS0B PE=1 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 111/193 (57.51%), Postives = 140/193 (72.54%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS7 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 111/193 (57.51%), Postives = 140/193 (72.54%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA2_YEAS1 (40S ribosomal protein S0-B OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS0B PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.767e-59
Identity = 111/193 (57.51%), Postives = 140/193 (72.54%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R YGQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRLDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAST (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae GN=RPS0A PE=1 SV=3)

HSP 1 Score: 227.639 bits (579), Expect = 4.721e-59
Identity = 110/193 (56.99%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAS7 (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae (strain YJM789) GN=RPS0A PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.721e-59
Identity = 110/193 (56.99%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA1_YEAS1 (40S ribosomal protein S0-A OS=Saccharomyces cerevisiae (strain RM11-1a) GN=RPS0A PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.721e-59
Identity = 110/193 (56.99%), Postives = 141/193 (73.06%), Query Frame = 1
Query:  112 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 687
            D Q++LAA  HLG +N     E YVF  R DG+++IN+GKTWEKL +AAR+I AI NP D++  S+R +GQRAVLKFA +T A  IAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKEA+  NIP IA  D DSP  +VD+ IP NN+GKHSIG +++LLAR VL++RG  +     W +M DL+FYR
Sbjct:   13 DAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAIPNPEDVVAISSRTFGQRAVLKFAAHTGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGALVDRTQPWSIMPDLYFYR 205          
The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_CANTR7.283e-6057.4340S ribosomal protein S0 OS=Candida tropicalis GN=... [more]
RSSA_KLULA1.622e-5955.4540S ribosomal protein S0 OS=Kluyveromyces lactis G... [more]
RSSA_PICGU2.119e-5957.4340S ribosomal protein S0 OS=Pichia guilliermondii ... [more]
RSSA_DEBHA2.767e-5958.0340S ribosomal protein S0 OS=Debaryomyces hansenii ... [more]
RSSA2_YEAST2.767e-5957.5140S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS72.767e-5957.5140S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA2_YEAS12.767e-5957.5140S ribosomal protein S0-B OS=Saccharomyces cerevi... [more]
RSSA1_YEAST4.721e-5956.9940S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]
RSSA1_YEAS74.721e-5956.9940S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]
RSSA1_YEAS14.721e-5956.9940S ribosomal protein S0-A OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bp
CAGAAGTCTCTCTCTAAGAGGCNAGTCTCAGNTTTCTCTCGCAGGTTTTA
ACCCCTAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGG
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