CF834177

Overview
NameCF834177
Unique NameCF834177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ASPNC (40S ribosomal protein S0 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rps0 PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.619e-67
Identity = 127/207 (61.35%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+      WDV+VDL+FYR
Sbjct:    2 APSQLPPIFNPTSQDIEMLLAAQCHLGSKNLQSHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLVWWLLAREVLRLRGTLASREVDWDVVVDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_SCLS1 (40S ribosomal protein S0 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=rps0 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.761e-67
Identity = 127/207 (61.35%), Postives = 156/207 (75.36%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +    DI+ +LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR
Sbjct:    2 APSQLPAIFNPTSQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_PODAN (40S ribosomal protein S0 OS=Podospora anserina GN=RPS0 PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.761e-67
Identity = 123/205 (60.00%), Postives = 154/205 (75.12%), Query Frame = 1
Query:   76 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 687
            A  P   +    DI+ +LAA+ H+G+KN     + Y++K R DG+ IIN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+HSIG ++W+LAR VL++RGTI      WDVMVDL+FYR
Sbjct:    4 ANLPSIFNATSQDIEQLLAAQCHIGSKNLGVHAQPYLWKTRADGVNIINIGKTWEKIVLAARIIAAIDNPSDVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTIYNREAPWDVMVDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_EMENI (40S ribosomal protein S0 OS=Emericella nidulans GN=rps0 PE=3 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.761e-67
Identity = 126/207 (60.87%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+      WDV+VDL+FYR
Sbjct:    2 APSQLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINVGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLANREVDWDVVVDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_PLAKH (40S ribosomal protein SA OS=Plasmodium knowlesi (strain H) GN=PKH_061110 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.606e-67
Identity = 121/204 (59.31%), Postives = 155/204 (75.98%), Query Frame = 1
Query:   76 ATAPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            +T  +  S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++I+NL KT+EKLQ+AAR+IVAI NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD QP+KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GT+     W+VMVD+F +R
Sbjct:    2 STNKKVQSPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHILNLAKTYEKLQLAARIIVAINNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFTEPRLLIVTDPRTDAQPVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTLPRSKPWNVMVDMFLWR 205          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_BOTFB (40S ribosomal protein S0 OS=Botryotinia fuckeliana (strain B05.10) GN=rps0 PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.606e-67
Identity = 127/207 (61.35%), Postives = 155/207 (74.88%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +    DI+ +LAA+ HLG KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RG+I     +WD MVDL+FYR
Sbjct:    2 APSQLPAIFNPTSQDIEQLLAAQCHLGAKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGSIASREAEWDTMVDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_CULQU (40S ribosomal protein SA OS=Culex quinquefasciatus GN=CPIJ013899 PE=3 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.710e-67
Identity = 122/198 (61.62%), Postives = 153/198 (77.27%), Query Frame = 1
Query:   94 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            L+ K+ D+  MLAA  H+G+ + +FQME YVFKRR DG++IINLG+TWEKL +AAR I +IE PG++   S+R +GQRAVLKFA YT A  IAGR TPG FTNQ+Q +F EPRLLI+TDP TDHQP+ EA+  NIP IAFC+TDSP+++VDI IP N K  HSIG ++WLLAR VL++RG I    KW++  DLFFYR
Sbjct:    8 LALKDDDVNKMLAATTHVGSTSVNFQMESYVFKRRPDGVHIINLGRTWEKLLLAARCIASIEYPGEVFAISSRQFGQRAVLKFAHYTEATPIAGRFTPGAFTNQIQPAFREPRLLIVTDPLTDHQPVTEASYVNIPVIAFCNTDSPLKFVDIAIPCNTKSPHSIGLMWWLLAREVLKLRGKI--SDKWELKPDLFFYR 203          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_PLAYO (40S ribosomal protein SA OS=Plasmodium yoelii yoelii GN=PY06059 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.151e-67
Identity = 122/197 (61.93%), Postives = 151/197 (76.65%), Query Frame = 1
Query:   97 SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 687
            S KE  I  ML  +VH+GTKN + +M+RYV+ R  DG++IINL KT+EKLQ+AARVIVA+ NP D++V SARP+G RAVLKFA+YT A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q +KE+A  NIP IA CD+DSP+ +VDI IP NNKGK SI  ++WLLA+ VL ++GTI     WDVMVD+F +R
Sbjct:    8 SPKEESIAKMLICKVHIGTKNLENKMKRYVYTRAKDGVHIINLAKTYEKLQLAARVIVAVSNPADVVVVSARPFGSRAVLKFAQYTGAQAIAGRWTPGMLTNQIIQKFIEPRLLIVTDPRTDAQSVKESAYANIPVIALCDSDSPLEHVDIAIPCNNKGKESIALMYWLLAQEVLYLKGTIPRSQAWDVMVDMFLWR 204          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ASPOR (40S ribosomal protein S0 OS=Aspergillus oryzae GN=rps0 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.151e-67
Identity = 124/207 (59.90%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +  + DI+ +LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I A+ENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP +A CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +WDV+ DL+FYR
Sbjct:    2 APSQLPPIFNPTQQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAVENPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVLALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTLATRETEWDVVPDLYFYR 208          
BLAST of CF834177 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFN (40S ribosomal protein S0 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rps0 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.151e-67
Identity = 124/207 (59.90%), Postives = 157/207 (75.85%), Query Frame = 1
Query:   82 APRQL----SQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 687
            AP QL    +  + DI+ +LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I A+ENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP +A CDTDSP  +VD+ IP NNKG+HSIG ++W+LAR VL++RGT+     +WDV+ DL+FYR
Sbjct:    2 APSQLPPIFNPTQQDIEQLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAVENPADICVISARPYGQRAVLKFAAHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDSQAIKEASYVNIPVLALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWMLAREVLRLRGTLATRETEWDVVPDLYFYR 208          
The following BLAST results are available for this feature:
BLAST of CF834177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ASPNC1.619e-6761.3540S ribosomal protein S0 OS=Aspergillus niger (str... [more]
RSSA_SCLS12.761e-6761.3540S ribosomal protein S0 OS=Sclerotinia sclerotior... [more]
RSSA_PODAN2.761e-6760.0040S ribosomal protein S0 OS=Podospora anserina GN=... [more]
RSSA_EMENI2.761e-6760.8740S ribosomal protein S0 OS=Emericella nidulans GN... [more]
RSSA_PLAKH3.606e-6759.3140S ribosomal protein SA OS=Plasmodium knowlesi (s... [more]
RSSA_BOTFB3.606e-6761.3540S ribosomal protein S0 OS=Botryotinia fuckeliana... [more]
RSSA_CULQU4.710e-6761.6240S ribosomal protein SA OS=Culex quinquefasciatus... [more]
RSSA_PLAYO6.151e-6761.9340S ribosomal protein SA OS=Plasmodium yoelii yoel... [more]
RSSA_ASPOR6.151e-6759.9040S ribosomal protein S0 OS=Aspergillus oryzae GN=... [more]
RSSA_ASPFN6.151e-6759.9040S ribosomal protein S0 OS=Aspergillus flavus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834177 ID=CF834177; Name=CF834177; organism=Citrus sinensis; type=EST; length=687bp
CAGAAGTCTCTCTCTAAGAGGCNAGTCTCAGNTTTCTCTCGCAGGTTTTA
ACCCCTAAAGATGGCGACCGGAACAGCAACGGCCCCGAGGCAGCTCTCTC
AGAAAGAGGCTGACATTCAGATGATGTTAGCCGCCGAAGTTCATTTGGGT
ACTAAGAACTGTGACTTCCAAATGGAACGTTACGTGTTCAAGCGCCGAAA
CGATGGAATTTATATTATCAATCTTGGTAAGACTTGGGAGAAGCTACAGA
TGGCGGCCAGGGTTATCGTAGCCATTGAAAACCCTGGGGACATTATTGTC
CAATCAGCTAGACCCTATGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTA
CACTCACGCCCATGCCATTGCTGGCAGGCACACTCCTGGTACATTTACCA
ATCAAATGCAAACATCATTCAATGAGCCCCGACTTCTCATTCTAACAGAT
CCACGAACAGACCATCAGCCAATTAAGGAAGCTGCCCTTGGAAACATTCC
CACCATTGCCTTTTGTGACACTGACTCACCTATGCGTTATGTTGATATTG
GCATTCCTGCCAATAACAAGGGCAAACACAGCATTGGGTGTCTCTTCTGG
CTTTTGGCTAGAATGGTTCTCCAGATGCGCGGCACTATTCGTCCTGGCCA
CAAGTGGGATGTGATGGTCGATCTGTTCTTCTACAGG
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