CF834179

Overview
NameCF834179
Unique NameCF834179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PSEE4 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas entomophila (strain L48) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T VGY+ G+  NP+YE+VCSG T H EVV V +D  + S+  LL MFW  H+PT   RQGNDVGTQYRS IY  +P+Q + AK S +  Q  L++    +I TEI  A   Y AE YHQQYLAK
Sbjct:   73 GVVSTVVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDKNKVSYHDLLTMFWELHNPTQGMRQGNDVGTQYRSAIYCTSPQQLEEAKTSRDAFQAELSKAGFGEITTEIAQAPTVYFAEAYHQQYLAK 200          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_METS4 (Peptide methionine sulfoxide reductase msrA OS=Methylobacterium sp. (strain 4-46) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 68/128 (53.12%), Postives = 78/128 (60.94%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            G+  T VGY+ G   NP+YE+VC+G T HNEVV V YDP    F  LL  FW  HDPT   RQGNDVGTQYRSG+Y   PE+   A+ S +   + L  K    I TEI     FY AE YHQQYLAK
Sbjct:   68 GIWVTAVGYAAGTTPNPTYEEVCTGLTGHNEVVLVAYDPAVLPFGQLLRTFWESHDPTQGMRQGNDVGTQYRSGLYVSDPERRAEAEASRDAYAQALRAKGFGSITTEIRDPGPFYFAEAYHQQYLAK 195          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBL (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 59/123 (47.97%), Postives = 83/123 (67.48%), Query Frame = 2
Query:    8 VPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 376
            V G+     GY+ G   NP Y  VCSGTT H E V++ +D K  S+  +L++FW  HDPT LNRQGNDVG QYRS I +++PEQ+K A++S+++  +  +  IVT++   K+FY AE+YHQ Y
Sbjct:   21 VEGIESVVSGYAAGQTKNPDYRSVCSGTTGHAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIPYHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDYHQNY 143          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_CLOPE (Peptide methionine sulfoxide reductase msrA OS=Clostridium perfringens GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ GV  TEVGY+ G   NP+YED+C+  T   EV  V YD    S   LL  FW   DPT LN+QGNDVG+QYR+GIY+      +    S E  QK  ++KIVTE+ P + +Y+AEEYHQ+YL K
Sbjct:   20 RINGVVSTEVGYANGRTENPTYEDICTKNTYFAEVCLVNYDENIISLKELLAKFWTIIDPTSLNKQGNDVGSQYRTGIYYVDSSDLEDILNSKEELQKSYSKKIVTEVKPLENYYKAEEYHQKYLKK 146          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PSEPW (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas putida (strain W619) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 69/128 (53.91%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T VGY+ G+  NP+YE+VCSG T H EVV V +D  + S+  LL MFW  H+PT   RQGNDVGTQYRS IY  +P+Q + AK S +  Q  LN+    +I TEI  A   Y AE YHQQYLAK
Sbjct:   73 GVVSTVVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDKDKVSYRELLAMFWELHNPTQGMRQGNDVGTQYRSAIYCTSPQQLEEAKASRDAFQAELNKAGYGEITTEIDQAPTVYFAEAYHQQYLAK 200          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_METM5 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.560e-29
Identity = 62/128 (48.44%), Postives = 83/128 (64.84%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R++ GV  TEVG+  G + NP+Y  VC G + H EVV + Y+PK   +  LL++FW  HDPT  NRQG DVG QY S I+++T EQ   A++S E+ QK  + +IVT I  A  F+ AEEYHQ+Y  K
Sbjct:   22 RKIKGVISTEVGFMGGTVKNPTYGQVCRGKSGHIEVVNITYNPKIVKYTDLLNLFWNNHDPTTPNRQGWDVGEQYSSHIFYFTEEQRLLAEKSFEKIQKSSDLRIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL +FW  HDPT   RQGND+GT YRS IY +       A++S E   + L  +    I TEI  A + Y AE+YHQQYLAK
Sbjct:   67 QVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKADRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQYLAK 197          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_OCHA4 (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.037e-29
Identity = 67/131 (51.15%), Postives = 81/131 (61.83%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL +FW  HDPT   RQGND+GT YRS IY +       A++S E   + L  +    I TEI  A + Y AE+YHQQYLAK
Sbjct:   67 QVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKTDRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQYLAK 197          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_HALWD (Peptide methionine sulfoxide reductase msrA OS=Haloquadratum walsbyi (strain DSM 16790) GN=msrA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 62/128 (48.44%), Postives = 84/128 (65.62%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            + + GV     GY+ G + NP+Y+ VCSGTT+H EVV+++YDP +  +  LL++F+A HDPT LNRQG DVGTQYRS I  +T EQ   A+  +E      +  IVTEI   ++F+ AEEYHQ Y  K
Sbjct:   20 KELAGVNTVTSGYAGGDIDNPTYKQVCSGTTDHAEVVQIEYDPTKIEYSELLEVFFATHDPTQLNRQGPDVGTQYRSIILTHTAEQRATAEAYIEALNDHYDDAIVTEIESLERFWSAEEYHQDYFEK 147          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ERWT9 (Peptide methionine sulfoxide reductase msrA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.661e-29
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 394
            +++ GV   E GY  G+  NP+Y+ VC G T H E +R+ +DP++ SF  LLD+ +A HDPT LNRQGND+GTQYRS I+  + EQ + AK ++ R Q   N  IVT I     +Y AE+YHQ Y A  G+
Sbjct:   21 KQIHGVVSVESGYIGGHTENPTYKQVCGGDTGHAEAIRIGFDPEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPVSEEQLEEAKMAIARAQSEHNDAIVTTIEAHSTWYPAEDYHQDYWAGEGQ 151          
The following BLAST results are available for this feature:
BLAST of CF834179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_PSEE41.194e-2953.13Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_METS41.194e-2953.13Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_LEPBL1.194e-2947.97Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA_CLOPE1.194e-2949.61Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_PSEPW1.560e-2953.91Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_METM51.560e-2948.44Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_OCHAN2.037e-2951.15Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_OCHA42.037e-2951.15Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_HALWD2.661e-2948.44Peptide methionine sulfoxide reductase msrA OS=Hal... [more]
MSRA_ERWT92.661e-2947.33Peptide methionine sulfoxide reductase msrA OS=Erw... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834179 ID=CF834179; Name=CF834179; organism=Citrus sinensis; type=EST; length=647bp
CCGTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAAACCATCAT
CTATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTATGTAAAG
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