CF834179

Overview
NameCF834179
Unique NameCF834179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.838e-33
Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.838e-33
Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ERWCT (Peptide methionine sulfoxide reductase msrA OS=Erwinia carotovora subsp. atroseptica GN=msrA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 70/130 (53.85%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PG+  T  GY  GY  NP+Y +VCSG T+H E VRV +DP   S+  LL +FW  HDP    RQG D+G+QYRS IY  TPEQE+AA+ SL+R Q+ +      R I TEI PA  FY AEE HQQYL K
Sbjct:   64 PGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPATISYSQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQASLQRFQQAMRENSDGRAISTEIEPAGPFYYAEEDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_SHIDS (Peptide methionine sulfoxide reductase msrA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++P V  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPSVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQIFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL5 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.969e-32
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND  TQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHSTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 69/132 (52.27%), Postives = 84/132 (63.64%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ S ER Q  +     +R + TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDSAARASRERFQAAMIAANDDRPVTTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL6 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6 GN=msrA PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 70/132 (53.03%), Postives = 85/132 (64.39%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T   Y+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAVYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 70/129 (54.26%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   65 GVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 73/136 (53.68%), Postives = 87/136 (63.97%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 400
            PGV  T VGY+ G   NP+YE+VCSG T H EVV V +DP+E  + TLL +FW  HDPT   RQGND+GTQYRS IY +   Q  +A+ S ER Q  L +     + TEI  A  FY AE+YHQQYLAK  GG  G
Sbjct:   70 PGVWTTAVGYAGGLTPNPTYEEVCSGLTGHTEVVLVVFDPQETDYRTLLKVFWEIHDPTQGMRQGNDIGTQYRSAIYCFDASQRASAEASRERFQAELAKAGYGPVTTEIADAPPFYYAEDYHQQYLAKNPGGYCG 205          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PHOPR (Peptide methionine sulfoxide reductase msrA OS=Photobacterium profundum GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 70/133 (52.63%), Postives = 89/133 (66.92%), Query Frame = 2
Query:    8 VPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ-------EKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +PG+  T VGYS G+  NP+YE+VCSG T H+EVVR+ YDP   S + +L +FW  H+PT   +QGND+GTQYRS IY  TP Q       ++  ++SLE+QQ  L   I TEI PA  FY AE+YHQQYL K
Sbjct:   63 LPGIYSTAVGYSGGFTPNPTYEEVCSGKTGHSEVVRIIYDPLIISLEQILTLFWESHNPTQGMQQGNDIGTQYRSVIYTTTPNQLTYAQHSKQCYQQSLEQQQ--LESPITTEIEPAGTFYFAEDYHQQYLVK 193          
The following BLAST results are available for this feature:
BLAST of CF834179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ECO458.838e-3353.79Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO248.838e-3353.79Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ERWCT1.507e-3253.85Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_SHIDS1.969e-3253.03Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_ECOL51.969e-3253.03Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ESCF34.386e-3252.27Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOL64.386e-3253.03Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO274.386e-3254.26Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_AZOVD4.386e-3253.68Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_PHOPR5.728e-3252.63Peptide methionine sulfoxide reductase msrA OS=Pho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834179 ID=CF834179; Name=CF834179; organism=Citrus sinensis; type=EST; length=647bp
CCGTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAAACCATCAT
CTATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTATGTAAAG
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