CF834179

Overview
NameCF834179
Unique NameCF834179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_METM7 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.728e-32
Identity = 67/128 (52.34%), Postives = 85/128 (66.41%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R V GV  TEVGY  G + NP+Y  VC G + H EVV+V YD K  ++D LL++FW  HDPT  NRQG DVG QY S I+++T EQ   A++SLE+ Q  ++ KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:   22 RHVDGVISTEVGYMGGNVKNPTYGQVCRGKSGHIEVVKVSYDSKIITYDDLLELFWKNHDPTTPNRQGWDVGEQYSSHIFYFTDEQRIVAEKSLEKMQCYMDLKIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCM (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCH (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_VIBC3 (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGYS G+  NP+YE+VCSG T H EVVRV +DP+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_SALTO (Peptide methionine sulfoxide reductase msrA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 2
Query:    8 VPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLA 382
            +PGV  T VGY+ GY  NPSY++VCSG T H EVV V+YDP + +++ LL +FW  HDPT   RQGNDVGTQYRS IY  T EQ   A+ S +    V+ R    +I TEI P   +Y AE YHQQYLA
Sbjct:   65 LPGVLTTSVGYAGGYTPNPSYDEVCSGRTGHAEVVHVRYDPTKITYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYPTTDEQLTTARASRDAFAPVVARAGKGEITTEISPLGDYYLAEGYHQQYLA 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 70/132 (53.03%), Postives = 83/132 (62.88%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASCERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_VIBPA (Peptide methionine sulfoxide reductase msrA OS=Vibrio parahaemolyticus GN=msrA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAA-KESLERQQKV---LNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGY+ G+  NP+YE+VC+G T H EVVRV +D +  S   LL +FW +HDPT   RQGND+GTQYRS IY Y+ +Q++ A K  L+ QQ +   L   I TEI+PA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVVSTSVGYAGGFTPNPTYEEVCTGKTGHTEVVRVVFDERVISLAQLLAVFWEKHDPTQGMRQGNDLGTQYRSAIYTYSQDQQEIADKSKLQYQQALEAELRSTITTEIVPAGPYYFAETYHQQYLAK 191          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 75/137 (54.74%), Postives = 88/137 (64.23%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL----NRKIVTEILPA--KKFYRAEEYHQQYLAK--GGRFG 400
            GV  T VGY  GY  NPSYE+ CSG T H E VRV +DP   S++ LL +FW  H+PT   RQGNDVGTQYRS IY ++P Q  AA  S    QKVL    +++I TEILPA  + F+ AE YHQQYL K  GG  G
Sbjct:   68 GVWTTLVGYQGGYTENPSYEEACSGLTGHTEAVRVVFDPAVVSYEELLKLFWESHNPTQGFRQGNDVGTQYRSAIYTHSPAQAAAADASRAAYQKVLTASGHQEITTEILPAEGRPFWPAEAYHQQYLDKNPGGYCG 204          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_METMA (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina mazei GN=msrA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 67/132 (50.76%), Postives = 87/132 (65.91%), Query Frame = 2
Query:    2 RRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 391
            R++ GV  T VGYS G+   P+YE VC+  T H E VRV +DP+  S+ TLLD+FW  HDPT  +RQG DVG QYRS I++++ EQ+ AA  S E  +K       +VTEI+P  +FY AE+YHQQY  K G
Sbjct:   69 RQIKGVVATAVGYSGGHFKRPTYEQVCTLDTGHAEAVRVIFDPEIVSYKTLLDVFWKIHDPTTKDRQGPDVGKQYRSVIFYHSDEQKAAALASKEELEKSGAFKNPVVTEIVPVSEFYMAEDYHQQYFEKKG 200          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 70/129 (54.26%), Postives = 82/129 (63.57%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   65 GVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_METM75.728e-3252.34Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_VIBCM7.482e-3253.44Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBCH7.482e-3253.44Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBC37.482e-3253.44Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_SALTO7.482e-3254.26Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPB7.482e-3253.03Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_VIBPA9.771e-3252.67Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_STRGG9.771e-3254.74Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_METMA9.771e-3250.76Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ECO5E9.771e-3254.26Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834179 ID=CF834179; Name=CF834179; organism=Citrus sinensis; type=EST; length=647bp
CCGTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAAACCATCAT
CTATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTATGTAAAG
back to top