CF834179

Overview
NameCF834179
Unique NameCF834179
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PASMU (Peptide methionine sulfoxide reductase msrA OS=Pasteurella multocida GN=msrA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 62/125 (49.60%), Postives = 85/125 (68.00%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 379
            ++ GV K   GY  G   NP+Y++VC+G T H E V+V++D    S++ LLD+F++ H+PT LN QG DVGTQYR+GIY+   EQE+ A + +   Q     KIVTE+LPA+ FY AE+YHQ YL
Sbjct:   21 QIKGVEKATSGYINGTTENPTYKEVCTGETGHAEAVKVEFDATVISYEKLLDIFFSIHNPTQLNHQGEDVGTQYRTGIYYLNDEQEQLANKKIAELQPHFAEKIVTEVLPAQTFYPAEDYHQGYL 145          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB6 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain 657 / Type Ba4) GN=msrA PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 64/127 (50.39%), Postives = 84/127 (66.14%), Query Frame = 2
Query:    5 RVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ G+ +T+VGY+ G   NPSY+ VCSGTT H E   ++YD    S + LL+ FW   DPT+LN+QGND GTQYR+GI++   +      ES  R+QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   20 RIKGIVETKVGYANGIKENPSYKVVCSGTTGHAEACYIKYDESIISLEELLNKFWNIIDPTVLNKQGNDRGTQYRTGIFYLNEKDLNIITESKSREQKNYKKAIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PSESM (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. tomato GN=msrA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.843e-31
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 2
Query:   14 GVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T  GY+ G+  NP+YE+VCSG T H EVV V Y+P++ S+D+LL +FW  H+PT   RQGND+GTQYRS IY  TPEQ  AAK S +  Q  L++     I TEI  A   Y AE YHQQYLAK
Sbjct:   71 GVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPEKISYDSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPEQLAAAKASADAFQAELSKAGLGGITTEIEEAPTVYFAETYHQQYLAK 198          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAE (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa GN=msrA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.843e-31
Identity = 70/129 (54.26%), Postives = 84/129 (65.12%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T VGY+ GY  NP+Y++VCSG T H+EVV V Y+P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:   70 PGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834179 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 70/130 (53.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GYS G+  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGHTPNPTYHEVCSGRTGHAEVVRVVFDPAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_PASMU2.177e-3149.60Peptide methionine sulfoxide reductase msrA OS=Pas... [more]
MSRA_CLOB62.177e-3150.39Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_PSESM2.843e-3154.69Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSEAE2.843e-3154.26Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_YERPY3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPS3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPG3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPE3.713e-3153.85Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834179 ID=CF834179; Name=CF834179; organism=Citrus sinensis; type=EST; length=647bp
CCGTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACAGCCAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGGTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAAACCATCAT
CTATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTATGTAAAG
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