CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.628e-20
Identity = 52/91 (57.14%), Postives = 62/91 (68.13%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQE---KAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            P   S+  LLD FW  HDPT  NRQG D+GTQYRS I+ +TPEQE   +A+KE +++  K   R IVT I PA  F+RAEEYHQQY AK G
Sbjct:   67 PGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQEAEARASKEEMDQSGK-FRRPIVTAIEPAGTFWRAEEYHQQYFAKRG 156          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN-----RKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGNDVGTQYRS IY  TPEQE AA+ SLER +  +      R I TEI PAK FY AE+ HQQYL K
Sbjct:  103 PNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQEAAAQASLERFRAAMEAAGDYRHITTEIAPAKPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PECCP (Peptide methionine sulfoxide reductase msrA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK-----IVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+D LL +FW  HDP    RQG D+G+QYRS IY  TPEQE+AA+ESL+R Q+ +  K     I TEI+PA  FY AE+ HQQYL K
Sbjct:  103 PAVISYDQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQESLQRFQQAMREKGDVRAISTEIVPAGPFYYAEDDHQQYLYK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MAGSA (Peptide methionine sulfoxide reductase msrA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.737e-20
Identity = 53/97 (54.64%), Postives = 63/97 (64.95%), Query Frame = -2
Query:  357 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 629
            P E S+  LL +FW  H+PT   RQGND+GTQYRS IY+ TPEQ+ AA+ S +   + L R     I TEI PA +FY AE YHQQYLAK  GG  G
Sbjct:  106 PAEVSYTALLRLFWEGHNPTQGMRQGNDIGTQYRSAIYWTTPEQQAAAEASAKAYGEALRRAGFGAITTEIAPAGRFYWAEGYHQQYLAKEPGGYCG 202          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            PK  S+  LLD+FW  HDPT  NRQG DVG QYRS I+++  EQ+ AA  S E  +K  V    IVTEI+P  +FY AE+YHQQY  K G
Sbjct:   88 PKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQKAAALASKEELEKAGVFKNPIVTEIVPVSEFYMAEDYHQQYFEKKG 177          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIC5 (Peptide methionine sulfoxide reductase msrA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            P E  F+ LL+ F+  HDPT LNRQG D GTQYRS I++++PEQ+  A+  ++R   +K   R IVT+++PA  F+RAEEYHQ+YL K G
Sbjct:   61 PDEIRFEQLLEAFFGLHDPTQLNRQGPDWGTQYRSVIFYHSPEQQTVAQAFIDRLTAEKRFPRPIVTQVVPAATFWRAEEYHQRYLEKRG 150          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 49/90 (54.44%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P + SF  LL +FW  H+PT   RQGND+GTQYRSG+Y Y+ EQ + A+ S +  Q +L  K    I TEI+ AK+FY AE YHQQYLAK
Sbjct:  108 PSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQAEQAEHSKQVVQAMLTEKGYGEITTEIIKAKEFYFAEAYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA2_ANASP (Peptide methionine sulfoxide reductase msrA 2 OS=Anabaena sp. (strain PCC 7120) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S+  LL +FW  H+PT   RQGNDVGTQYRSGIY Y+  Q++ A+ S +  Q+ L+     KI TEIL A +FY AE YHQQYLAK
Sbjct:  107 PKVISYTQLLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSEAQKQLAEASRDAYQQALSSAGYEKITTEILDAPEFYYAEAYHQQYLAK 196          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PASMU (Peptide methionine sulfoxide reductase msrA OS=Pasteurella multocida GN=msrA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = -2
Query:  378 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 617
            S++ LLD+F++ H+PT LN QG DVGTQYR+GIY+   EQE+ A + +   Q     KIVTE+LPA+ FY AE+YHQ YL
Sbjct:   66 SYEKLLDIFFSIHNPTQLNHQGEDVGTQYRTGIYYLNDEQEQLANKKIAELQPHFAEKIVTEVLPAQTFYPAEDYHQGYL 145          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.070e-19
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = -2
Query:  363 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 629
            P    +  LLD+FW+ HDPT LNRQG DVG QYRS I++++ EQ +AA ES  R ++      +IVT I PA  FY AEEYHQQYL K  R
Sbjct:   67 PDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYHQQYLEKNPR 157          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_METMJ1.628e-2057.14Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ENTS82.126e-2057.14Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_PECCP2.777e-2054.95Peptide methionine sulfoxide reductase msrA OS=Pec... [more]
MSRA_MAGSA4.737e-2054.64Peptide methionine sulfoxide reductase msrA OS=Mag... [more]
MSRA_METAC6.187e-2054.44Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ACIC56.187e-2052.22Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_SACD28.080e-2054.44Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA2_ANASP8.080e-2055.56Peptide methionine sulfoxide reductase msrA 2 OS=A... [more]
MSRA_PASMU1.800e-1955.00Peptide methionine sulfoxide reductase msrA OS=Pas... [more]
MSRA_METTH3.070e-1953.85Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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