CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERP3 (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 48/91 (52.75%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMTAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 48/91 (52.75%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ  AA  S ER Q  +      R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQSTAAHASRERFQSAMADAGDERPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAE (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:  109 PQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBL (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBK (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Okra / Type B1) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDQKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCM (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain M66-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:  102 PERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCH (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:  102 PERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_VIBC3 (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:  102 PERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_YERP38.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_SALTY8.362e-1752.75Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS8.362e-1752.75Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALAR8.362e-1752.75Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PSEAE8.362e-1752.22Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_CLOBL8.362e-1750.00Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOBK8.362e-1750.00Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_VIBCM1.092e-1651.11Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBCH1.092e-1651.11Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBC31.092e-1651.11Peptide methionine sulfoxide reductase msrA OS=Vib... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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