CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:  109 PQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAALASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ARTS2 (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter sp. (strain FB24) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = -2
Query:  348 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 611
            + +LDMF+A HDPT LNRQG DVGTQYRS +++ T E++   +E++ER Q +    IVTE+     F+ AE++HQ Y AK    G+ Q
Sbjct:   67 EVILDMFFALHDPTTLNRQGYDVGTQYRSSMFYETTEEKILFEEAIERNQALWAHPIVTEVSRLPVFHVAEDFHQDYYAKHPEQGYCQ 154          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBH (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVIIKSKYQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB1 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVIIKSKYQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    ++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALAI (Peptide methionine sulfoxide reductase msrA OS=Salinispora arenicola (strain CNS-205) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  375 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLA 629
            P + +++ LL +FW  HDPT   RQGNDVGTQYRS IY  T EQ  AA+ S +    V+ R    +I TEI P   +Y AE+YHQQYLA
Sbjct:  105 PTKIAYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYTTTEEQLTAAQASRDAFAPVVARAGKGEITTEIGPLGDYYFAEDYHQQYLA 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 46/90 (51.11%), Postives = 54/90 (60.00%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDPT   RQGNDVGTQYRS IY  TPEQ + A+ S +     L  +    + TEI  A  FY AE+YHQQYL K
Sbjct:  106 PATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQLRLAEASRDSYASRLKAQGYGAVTTEIREAPAFYYAEDYHQQYLHK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = -2
Query:  357 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 629
            P++ SFD LL +FW  H+PT   RQGND GTQYRS IY     Q +AA  S  R Q  L++     I TEI  A  FY AE YHQQYLAK  GG  G
Sbjct:  109 PQQTSFDALLKVFWEAHNPTQGMRQGNDQGTQYRSAIYCQDHAQLEAALASQARFQAELDKAGLGSITTEICEAPIFYYAETYHQQYLAKNPGGYCG 205          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 46/90 (51.11%), Postives = 57/90 (63.33%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P+  SF+ LL +FW  HDPT   RQGND G+QYRS IY  + E   AA +S E  QKVL+      I T+I   + FY AE+YHQQYL+K
Sbjct:  123 PEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK 212          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ALKMQ (Peptide methionine sulfoxide reductase msrA OS=Alkaliphilus metalliredigens (strain QYMF) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW   DPT+ NRQG D+G+QYR+GIY+   E      +S E QQK  +  IVTEI P K FY AEEYHQ+YL K
Sbjct:   65 SLEILLNGFWKIIDPTVENRQGPDIGSQYRTGIYYGHEEDLDTIIKSKEMQQKKYDANIVTEIEPLKAFYDAEEYHQKYLKK 146          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_PSEA81.092e-1652.22Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_ARTS21.092e-1647.73Peptide methionine sulfoxide reductase msrA OS=Art... [more]
MSRA_CLOBH1.426e-1650.00Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOB11.426e-1650.00Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_SALSV1.863e-1651.65Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALAI1.863e-1651.69Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_RHOCS1.863e-1651.11Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_PSEMY1.863e-1652.58Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_BOVIN1.863e-1651.11Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_ALKMQ1.863e-1653.66Peptide methionine sulfoxide reductase msrA OS=Alk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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