CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MARMM (Peptide methionine sulfoxide reductase msrA OS=Maricaulis maris (strain MCS10) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 47/90 (52.22%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S D +L +FW  HDPT   RQGND GTQYRS IY  TPEQ  AA ++  R Q  L+      I TEI+ A  FY AE+ HQQYLA+
Sbjct:  105 PEMLSLDQVLKIFWEGHDPTQGMRQGNDRGTQYRSAIYATTPEQLVAAHDAAARYQAELDGAGLGTITTEIVKAGPFYYAEDEHQQYLAR 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ENT38 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sp. (strain 638) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    ++ LL +FW  HDP    +QGND GTQYRS IY  TPEQ+ AA+ SL R Q  +     +R + TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVTRYEQLLQVFWENHDPAQGMQQGNDHGTQYRSAIYPLTPEQDAAARASLARFQDAMQAAGDHRTVTTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBM (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  +++K   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNLIIKSKSQEKKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFT (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/87 (57.47%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   RQGND+GTQYRS I+  T EQ  AA  S E  Q+ LN      I TEIL PA  FY AE  HQQYLAK
Sbjct:  109 SFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFM (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M12) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/87 (57.47%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   RQGND+GTQYRS I+  T EQ  AA  S E  Q+ LN      I TEIL PA  FY AE  HQQYLAK
Sbjct:  109 SFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XYLF2 (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M23) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 50/87 (57.47%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN----RKIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   RQGND+GTQYRS I+  T EQ  AA  S E  Q+ LN      I TEIL PA  FY AE  HQQYLAK
Sbjct:  109 SFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQYAAASASREVYQQQLNTAGYTAITTEILHPAPPFYYAENEHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 47/91 (51.65%), Postives = 53/91 (58.24%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQAAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_NEIMB (Peptide methionine sulfoxide reductase msrA/msrB OS=Neisseria meningitidis serogroup B GN=msrAB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S D +L  F+   DPT LN+QGND GTQYRSG+Y+  P ++     +L+R+Q+     +V E  P K FY AEEYHQ YL K
Sbjct:  262 SLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIK 343          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_NEIMA (Peptide methionine sulfoxide reductase msrA/msrB OS=Neisseria meningitidis serogroup A GN=msrAB PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 40/82 (48.78%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S D +L  F+   DPT LN+QGND GTQYRSG+Y+  P ++     +L+R+Q+     +V E  P K FY AEEYHQ YL K
Sbjct:  262 SLDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLKNFYDAEEYHQDYLIK 343          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_RHIME (Peptide methionine sulfoxide reductase msrA 1 OS=Rhizobium meliloti GN=msrA1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ---EKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAK 629
            P + S   LL  F+  HDPT   RQGNDVGT YRS IY Y  EQ     AA+ + ++  +V N  R+I TEI  A  FY AE+YHQQYLAK
Sbjct:  108 PAKVSLQRLLKTFFEEHDPTQGMRQGNDVGTTYRSAIYVYDEEQLAEANAARNAFQKALRVYNHDREITTEIAKAGPFYFAEDYHQQYLAK 198          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_MARMM3.177e-1652.22Peptide methionine sulfoxide reductase msrA OS=Mar... [more]
MSRA_ENT383.177e-1649.45Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_CLOBM3.177e-1648.78Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_XYLFT4.150e-1657.47Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_XYLFM4.150e-1657.47Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_XYLF24.150e-1657.47Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_SALA44.150e-1651.65Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRAB_NEIMB4.150e-1648.78Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_NEIMA4.150e-1648.78Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA1_RHIME4.150e-1651.65Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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