CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEPK (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas putida (strain KT2440) GN=msrA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 617
            S+  LL MFW  H+PT   RQGND+GTQYRS IY  +PEQ + AK S +  Q  L++    +I TEI  A   Y AE YHQQYLAK
Sbjct:  115 SYRELLAMFWELHNPTQGMRQGNDIGTQYRSAIYCTSPEQLEQAKASRDAFQAELSKAGFGEITTEIDQAPTVYFAEAYHQQYLAK 200          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S D LL +FW  HDPT   RQGND+GT YRS IY +       A++S E   + L  +    I TEI  A + Y AE+YHQQYLAK
Sbjct:  108 PKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKADRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_OCHA4 (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=msrA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 44/90 (48.89%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S D LL +FW  HDPT   RQGND+GT YRS IY +       A++S E   + L  +    I TEI  A + Y AE+YHQQYLAK
Sbjct:  108 PKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTFDKTDRDVAEKSREAYSQALAGRGLGPITTEIEDAPELYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBJ (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Kyoto / Type A2) GN=msrA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW+  DPT+LN+QGND GTQYR+ I++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWSIIDPTVLNKQGNDRGTQYRTCIFYLDEKDLNVIIKSKYQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METNO (Peptide methionine sulfoxide reductase msrA OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=msrA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 45/90 (50.00%), Postives = 51/90 (56.67%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P    F+ LL  FW  HDPT   RQGNDVGTQYRSG+Y    E+   A+ S +   + L  K    I TEI     FY AE YHQQYLAK
Sbjct:  106 PAAMPFERLLKTFWESHDPTQGMRQGNDVGTQYRSGLYVADAERRAQAEASRDAYGEALRAKGYGPITTEIRDPGPFYFAEAYHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_HELPY (Peptide methionine sulfoxide reductase msrA/msrB OS=Helicobacter pylori GN=msrAB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK+ S D LL  ++   DP  +N+QGNDVG QYR+GIY+     ++    +L+  QK +  KI  E+ P K + RAEEYHQ YL K
Sbjct:   93 PKKISLDKLLRYYFKVVDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDHALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKK 178          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_HELPJ (Peptide methionine sulfoxide reductase msrA/msrB OS=Helicobacter pylori J99 GN=msrAB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK+ S D LL  ++   DP  +N+QGNDVG QYR+GIY+     ++    +L+  QK +  KI  E+ P K + RAEEYHQ YL K
Sbjct:   93 PKKISLDKLLRYYFKVIDPVSVNKQGNDVGRQYRTGIYYVNSADKEVIDNALKALQKEVKGKIAIEVEPLKNYVRAEEYHQDYLKK 178          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEPG (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas putida (strain GB-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 617
            S+  LL MFW  H+PT   RQGNDVGTQYRS IY  +PEQ + A+ S +  Q  L++    +I TEI  A   Y AE YHQQYLAK
Sbjct:  115 SYRELLAMFWELHNPTQGMRQGNDVGTQYRSAIYCTSPEQLEQAEASRDAFQAELSKAGFGEITTEIDQAPTVYFAEAYHQQYLAK 200          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_TRIEI (Peptide methionine sulfoxide reductase msrA OS=Trichodesmium erythraeum (strain IMS101) GN=msrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            ++ S   +L++F+A HDPT  NRQGNDVGTQYRS +  ++ EQ+  A+E +            IVTE++  K +YRAEEYHQ Y  K
Sbjct:   63 EKISLSQILEIFFATHDPTTPNRQGNDVGTQYRSVVMCHSQEQKDIAQEVISTLGNNGTFENPIVTEVVDLKDYYRAEEYHQNYFNK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJJ (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=msrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  345 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 626
            K+ S   +L +F+  HDPT +++QG D+G QYRS I++   E +  A+  +E QQK+ ++KIVT+I   + +Y+AE YHQ Y       G+ Q+
Sbjct:   60 KQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEEDKILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQA 153          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_PSEPK1.577e-1553.49Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_OCHAN1.577e-1548.89Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_OCHA41.577e-1548.89Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_CLOBJ1.577e-1548.78Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_METNO2.690e-1550.00Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRAB_HELPY2.690e-1545.35Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_HELPJ2.690e-1545.35Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_PSEPG3.513e-1553.49Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_TRIEI4.588e-1545.98Peptide methionine sulfoxide reductase msrA OS=Tri... [more]
MSRA_CAMJJ4.588e-1539.36Peptide methionine sulfoxide reductase msrA OS=Cam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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