CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJ8 (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=msrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  345 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 626
            K+ S   +L +F+  HDPT +++QG D+G QYRS I++   E +  A+  +E QQK+ ++KIVT+I   + +Y+AE YHQ Y       G+ Q+
Sbjct:   60 KQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEEDKILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQA 153          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_AGRT5 (Peptide methionine sulfoxide reductase msrA OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=msrA PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.588e-15
Identity = 50/108 (46.30%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  327 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN-----RKIVTEILPAKKFYRAEEYHQQYLAK--GGRFGFKQSTEKGCN 629
            P   S   LL +F+  HDPT   RQGNDVGT YRS IY  T  Q + A+++ +  Q+ L+       I TEI P + FY AE+YHQQYLAK  GG  G +  T   CN
Sbjct:  108 PAVISLSGLLKIFFEEHDPTQGMRQGNDVGTTYRSAIYATTEGQLQQAQKARDAFQQALDEAGHGHAITTEIGPLETFYYAEDYHQQYLAKNPGGYCGLR-GTGVSCN 214          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOTE (Peptide methionine sulfoxide reductase msrA OS=Clostridium tetani GN=msrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 40/78 (51.28%), Postives = 50/78 (64.10%), Query Frame = -2
Query:  372 LLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 605
            +LD FW   DPT+LNRQG DVG QYR+GIY+Y  E      +S +   K  ++ IVTE+     FY AEEYHQ+YL K
Sbjct:   75 ILDKFWDIIDPTILNRQGPDVGHQYRTGIYYYDKEDLDDILKSKDEISKKYDKPIVTEVEKVTYFYLAEEYHQKYLKK 152          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJE (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni GN=mrsA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  345 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 626
            K+ S   +L +F+  HDPT +++QG D+G QYRS I++   E +  A+  +E QQK+ ++KIVT+I   + +Y+AE YHQ Y       G+ Q+
Sbjct:   60 KQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEEDKILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQA 153          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSU (Peptide methionine sulfoxide reductase msrA OS=Brucella suis GN=msrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = -2
Query:  318 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAKG--GRFGFKQSTEKGCNDPI 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK   G  G +  T+  C  P+
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAKNPDGYCGLR-GTDVSCPIPL 216          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANCP (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEIL PA  FY AE+ HQQYLAK
Sbjct:  109 SFEQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCSTQAQYDAAIASRDAYQQQLTAAGYGDITTEILYPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANCB (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain B100) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 48/87 (55.17%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEIL PA  FY AE+ HQQYLAK
Sbjct:  109 SFEQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCSTQAQYDAAIASRDAYQQQLTAAGYGDITTEILYPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_AZOC5 (Peptide methionine sulfoxide reductase msrA OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=msrA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = -2
Query:  357 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK--GGRFG 629
            P   S+  L+ +F+  HDPT   RQGNDVGTQYRSGIY   P+++  A+      +  L  K    I TEI+    FY AE+YHQQYL+K  GG  G
Sbjct:  105 PAVISYADLVKLFFESHDPTQGMRQGNDVGTQYRSGIYTSDPQEKAVAEAVKASYEAALKAKGFGPITTEIIDGGPFYFAEDYHQQYLSKNPGGYCG 201          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCGE (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma genitalium GN=msrA PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            KE S   L++  +   DPT+ NRQGND+GTQYR+GIY+     EK   +   + QK  ++ IVTE    + +Y AEEYHQ YL K
Sbjct:   62 KEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYWTDSSDEKIINDKFLKLQKNYSKPIVTENKKVENYYLAEEYHQDYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJR (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni (strain RM1221) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = -2
Query:  345 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 626
            K+ S   +L +F+  HDPT +++QG D+G QYRS I++   E +  A+  +E QQK+ ++KIVT+I   + +Y+AE YHQ Y       G+ Q+
Sbjct:   60 KQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEEDKILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQA 153          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_CAMJ84.588e-1539.36Peptide methionine sulfoxide reductase msrA OS=Cam... [more]
MSRA_AGRT54.588e-1546.30Peptide methionine sulfoxide reductase msrA OS=Agr... [more]
MSRA_CLOTE7.826e-1551.28Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CAMJE7.826e-1539.36Peptide methionine sulfoxide reductase msrA OS=Cam... [more]
MSRA_BRUSU7.826e-1540.91Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_XANCP1.022e-1455.17Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANCB1.022e-1455.17Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_AZOC51.022e-1446.39Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_MYCGE1.335e-1445.88Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_CAMJR1.335e-1439.36Peptide methionine sulfoxide reductase msrA OS=Cam... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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