CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUSI (Peptide methionine sulfoxide reductase msrA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUO2 (Peptide methionine sulfoxide reductase msrA OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUME (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQITDAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUMB (Peptide methionine sulfoxide reductase msrA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQITEAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUC2 (Peptide methionine sulfoxide reductase msrA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUAB (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA2 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain 2308) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA1 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain S19) GN=msrA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  + + LL +FW  HDPT   RQGND+GT YRS IY +       A++S +   + L  +    + T+I  A  FY AE+YHQQYLAK
Sbjct:  108 PKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTFNAVDRAVAEKSRDAYSQALASRGLGPVTTQIADAPDFYYAEDYHQQYLAK 197          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_TREPA (Peptide methionine sulfoxide reductase msrB/msrA OS=Treponema pallidum GN=msrAB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S++ LL  F+  HDPT LN+QG DVGTQYRS I++ +  Q++ A+  + R        R +VT +  A+ FY AEEYHQ YL K
Sbjct:  186 PQVISYEDLLKHFFRMHDPTSLNKQGGDVGTQYRSAIFYLSGTQKQQAETLMGRYAGAGKFTRPLVTTLEEARDFYPAEEYHQDYLTK 273          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METHJ (Peptide methionine sulfoxide reductase msrA OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  357 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK-GGRFG 617
            ++  LL++F++ H+PT +NRQG DVG+QYRS I++ +PEQ++ A+  +    Q    +  I TE++PA+ F+ AEEYHQ Y  K G R+G
Sbjct:   65 TYRKLLEIFFSLHNPTEVNRQGPDVGSQYRSVIFYTSPEQKEEAEMFIAEMNQSGRYHAAIATEVVPAETFWPAEEYHQSYFLKIGQRYG 154          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_BRUSI1.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUO21.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUME1.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUMB1.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUC21.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUAB1.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA21.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_BRUA11.743e-1444.44Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRAB_TREPA1.743e-1445.45Peptide methionine sulfoxide reductase msrB/msrA O... [more]
MSRA_METHJ2.277e-1444.44Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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