CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANOP (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 47/87 (54.02%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI-LPAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEI  PA  FY AE+ HQQYLAK
Sbjct:  109 SFEHLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYAAALASRDAYQQQLTAAGYGAITTEIGFPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANOM (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 47/87 (54.02%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI-LPAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEI  PA  FY AE+ HQQYLAK
Sbjct:  109 SFEHLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYAAALASRDAYQQQLTAAGYGAITTEIGFPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_POLSQ (Peptide methionine sulfoxide reductase msrA OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 42/94 (44.68%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  354 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 629
            PK  SF  LL++F+  H+PT LN QGND GTQYRS IY ++ EQ K A E ++     K+    +VT+I  A   Y AE+YHQ Y  +    G+
Sbjct:   72 PKVVSFRDLLEIFFVIHNPTTLNYQGNDHGTQYRSVIYTHSDEQAKIANEVVQELEDSKIYADPVVTQIESAPTIYPAEDYHQNYFQQHPHQGY 165          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_RHILO (Peptide methionine sulfoxide reductase msrA 1 OS=Rhizobium loti GN=msrA1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+ TLL+ F+  HDPT  NRQGNDVG  YRS IY+ + EQ++ A++++       +   K+VTE+ PA  F+ AE  HQ YL K
Sbjct:   61 PAVISYRTLLERFFQIHDPTTRNRQGNDVGMSYRSAIYYTSDEQKRVAEDTIADVDASGLWPGKVVTEVAPAGAFWEAEPEHQDYLEK 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANC8 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEIL-PAKKFYRAEEYHQQYLAK 617
            SF+ LL  FW  HDPT   +QG+DVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEIL PA  FY AE+ HQQYLAK
Sbjct:  109 SFEQLLRTFWESHDPTQGMQQGSDVGTQYRSAIYCSTQAQYDAAIASRDAYQQQLTAAGYGDITTEILYPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CAMJD (Peptide methionine sulfoxide reductase msrA OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=msrA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  345 LLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 605
            +L +F+  HDPT +++QG D+G QYRS I++   E +  A+  +E+QQK+ ++KIVT+I   + +Y+AE YHQ Y       G+ Q+
Sbjct:   67 ILTLFFKIHDPTSIDKQGADIGIQYRSIIFYENEEDKILAQNFIEKQQKIFSKKIVTQISRLQTYYKAENYHQHYFMNHPDQGYCQA 153          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANCH (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. phaseoli GN=msrA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEI-LPAKKFYRAEEYHQQYLAK 617
            SF  LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEI  PA  FY AE+ HQQYLAK
Sbjct:  109 SFAQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYDAALASRDAYQQQLTASGYGDITTEIRFPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANC5 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=msrA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 47/87 (54.02%), Postives = 51/87 (58.62%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI-LPAKKFYRAEEYHQQYLAK 617
            SF  LL  FW  HDPT   +QGNDVGTQYRS IY  T  Q  AA  S +  Q+ L       I TEI  PA  FY AE+ HQQYLAK
Sbjct:  109 SFAQLLRTFWESHDPTQGMQQGNDVGTQYRSAIYCTTQAQYDAALASRDAYQQQLTAAGYGAITTEIRFPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPN (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pneumoniae GN=msrA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 36/82 (43.90%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + L+D F+   DPT+ NRQGND+GTQYR+G+Y+  P+ E+   +     Q    + IVTE    + ++ AEEYHQ YL K
Sbjct:   65 SLNELIDAFFKVIDPTIRNRQGNDIGTQYRTGVYWVDPQDEQLITQKFRELQANYPKPIVTENRAMENYFLAEEYHQDYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA3_RHIME (Peptide methionine sulfoxide reductase msrA 3 OS=Rhizobium meliloti GN=msrA3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S+  +L++F+  HDPT  +RQGND+GT YRS IY+   EQ++ A+E++       +   K+VTE+ P + F+ AE  HQ YL +
Sbjct:   58 PERISYRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKVVTEVEPVRDFWEAEPEHQNYLER 145          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_XANOP2.974e-1454.02Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANOM2.974e-1454.02Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_POLSQ2.974e-1444.68Peptide methionine sulfoxide reductase msrA OS=Pol... [more]
MSRA1_RHILO2.974e-1445.45Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]
MSRA_XANC83.884e-1454.02Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_CAMJD3.884e-1440.23Peptide methionine sulfoxide reductase msrA OS=Cam... [more]
MSRA_XANCH5.073e-1454.02Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_XANC56.625e-1454.02Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_MYCPN6.625e-1443.90Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA3_RHIME6.625e-1440.91Peptide methionine sulfoxide reductase msrA 3 OS=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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