CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_XANAC (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas axonopodis pv. citri GN=msrA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 46/87 (52.87%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEI-LPAKKFYRAEEYHQQYLAK 617
            SF  LL  FW  HDPT   +QGND+GTQYRS IY  T  Q  AA  S +  Q+ L      +I TEI  PA  FY AE+ HQQYLAK
Sbjct:  109 SFAQLLRTFWESHDPTQGMQQGNDMGTQYRSAIYCTTQAQYDAALASRDAYQQQLTAAGYGEITTEIRFPAPTFYYAEDDHQQYLAK 195          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_NITSB (Peptide methionine sulfoxide reductase msrA OS=Nitratiruptor sp. (strain SB155-2) GN=msrA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 38/83 (45.78%), Postives = 51/83 (61.45%), Query Frame = -2
Query:  381 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 629
            P   +++ LL +F+A HDPT LNRQG D+GTQYRS I+    EQ+  A++ +++       KIVT I     FY AE YHQ Y
Sbjct:   62 PHIINYEELLHIFFAVHDPTQLNRQGADIGTQYRSVIFPLNEEQKAIAQKVIQKLNPYFENKIVTTIENPGTFYEAESYHQNY 144          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CHRVO (Peptide methionine sulfoxide reductase msrA OS=Chromobacterium violaceum GN=msrA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.653e-14
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = -2
Query:  348 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 629
            P    + TLL +F+A HDPT LNRQG+DVGTQY S I++    Q + A+  + +   +++ +  IVT +  A +F+ AE+YHQ Y A+  +  + Q
Sbjct:   61 PALIDYATLLQVFFAVHDPTTLNRQGHDVGTQYASAIFYLDETQRECARRVIAQLDAEQIFDAPIVTRVESAPRFHPAEDYHQNYYAQNQQQNYCQ 156          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSYWF (Peptide methionine sulfoxide reductase msrA OS=Psychrobacter sp. (strain PRwf-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 35/89 (39.33%), Postives = 56/89 (62.92%), Query Frame = -2
Query:  345 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 611
            + +LD+F+A HDPT  +RQGND+G+QYRS +++   E +K   +    + + +   IVTE+ P  +F+ AE+YHQ Y  K    G+ Q+
Sbjct:   68 EVVLDIFFATHDPTTRDRQGNDIGSQYRSVVFYTDEETQKPTIDRTINKLRDMGLDIVTEVHPVHEFHVAEDYHQDYFNKNPTQGYCQA 156          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSYCK (Peptide methionine sulfoxide reductase msrA OS=Psychrobacter cryohalolentis (strain K5) GN=msrA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -2
Query:  381 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 611
            + +LD+F+A HDPT ++RQGNDVG+QYRS + FYT E +K   +    + + +   +VTE+ PA +FY+AE+ HQ +
Sbjct:   67 EVILDVFFATHDPTTMDRQGNDVGSQYRS-VVFYTDETQKPTIDRTINKLRDMGINVVTEVHPAVEFYQAEDTHQDF 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_ANASP (Peptide methionine sulfoxide reductase msrA 1 OS=Anabaena sp. (strain PCC 7120) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S++ LL +FW  HDPT LNRQG D G QYRS I+F+  +Q +AA++S  + Q        IVTEI    ++Y A E HQQY  K
Sbjct:   72 PQLVSYEDLLAVFWDIHDPTTLNRQGPDKGEQYRSVIFFHNEQQAEAAQQSKAKVQVSGRFELDIVTEIKHKSEYYLATEEHQQYFEK 159          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSS (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain MCS) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P +  +  LL+ F+  HDPT  NRQGNDVGT YRS I++   EQ++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   60 PAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSK (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain KMS) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P +  +  LL+ F+  HDPT  NRQGNDVGT YRS I++   EQ++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   60 PAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDEQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCUA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium ulcerans (strain Agy99) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+   + TLL+ F+  HDPT  NRQGND GT YRS IY+   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PQATDYRTLLEFFFQIHDPTTPNRQGNDRGTSYRSAIYYLDDEQKRVALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQHYLQR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCMM (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+   + TLL+ F+  HDPT  NRQGND GT YRS IY+   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PQATDYRTLLEFFFQIHDPTTPNRQGNDRGTSYRSAIYYLDDEQKRVALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_XANAC8.653e-1452.87Peptide methionine sulfoxide reductase msrA OS=Xan... [more]
MSRA_NITSB8.653e-1445.78Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA_CHRVO8.653e-1439.58Peptide methionine sulfoxide reductase msrA OS=Chr... [more]
MSRA_PSYWF1.130e-1339.33Peptide methionine sulfoxide reductase msrA OS=Psy... [more]
MSRA_PSYCK1.130e-1345.45Peptide methionine sulfoxide reductase msrA OS=Psy... [more]
MSRA1_ANASP1.476e-1346.59Peptide methionine sulfoxide reductase msrA 1 OS=A... [more]
MSRA_MYCSS1.928e-1342.05Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCSK1.928e-1342.05Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCUA2.518e-1343.18Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCMM2.518e-1343.18Peptide methionine sulfoxide reductase msrA OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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