CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_CAUCR (Peptide methionine sulfoxide reductase msrA 1 OS=Caulobacter crescentus GN=msrA1 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.237e-19
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            PK  +++ LL  FW  HDPT   RQGND+GTQYRSG+Y  +  Q  AA ES    Q+ L+ +    I TEI PA  FY AE+YHQQYLAK
Sbjct:  105 PKVVTYEALLKTFWENHDPTQGMRQGNDIGTQYRSGLYVTSDAQAAAAAESKAAYQQALSARGLGTITTEIAPAGPFYFAEDYHQQYLAK 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METMA (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina mazei GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 46/90 (51.11%), Postives = 60/90 (66.67%), Query Frame = -2
Query:  366 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 629
            P+  S+ TLLD+FW  HDPT  +RQG DVG QYRS I++++ EQ+ AA  S E  +K       +VTEI+P  +FY AE+YHQQY  K G
Sbjct:  111 PEIVSYKTLLDVFWKIHDPTTKDRQGPDVGKQYRSVIFYHSDEQKAAALASKEELEKSGAFKNPVVTEIVPVSEFYMAEDYHQQYFEKKG 200          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_KLEP3 (Peptide methionine sulfoxide reductase msrA OS=Klebsiella pneumoniae (strain 342) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 51/91 (56.04%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN-----RKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ  AAK SL R Q  +N     R I TEI  AK FY AE+ HQQYL K
Sbjct:  103 PQVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQTAAAKASLARFQAAMNDAHDTRHITTEIATAKPFYYAEDDHQQYLYK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOAB (Peptide methionine sulfoxide reductase msrA OS=Clostridium acetobutylicum GN=msrA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.840e-19
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            K+   + L+D +W   DPT+ NRQG+D GTQYR+GIY+   E  K   ES +++Q+  +  IVTEILP K FY AEEYHQ+YL K
Sbjct:   62 KQLKLEKLIDAYWKVVDPTLKNRQGHDEGTQYRTGIYYVDEEDLKVILESKDKEQEKYDAPIVTEILPLKNFYDAEEYHQKYLDK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBJ (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 42/82 (51.22%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  381 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 626
            K  S+  +L++FW  HDPT LNRQGNDVGTQYRS I +++PEQ+K A++S+++  +  +  IVT++   K+FY AE+YHQ Y
Sbjct:   62 KVISYFEILEIFWISHDPTTLNRQGNDVGTQYRSIILYHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDYHQNY 143          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ERWCT (Peptide methionine sulfoxide reductase msrA OS=Erwinia carotovora subsp. atroseptica GN=msrA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG D+G+QYRS IY  TPEQE+AA+ SL+R Q+ +      R I TEI PA  FY AEE HQQYL K
Sbjct:  103 PATISYSQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQEQAAQASLQRFQQAMRENSDGRAISTEIEPAGPFYYAEEDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBY (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AYE) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBS (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain SDF) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBC (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ACICU) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB5 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB0057) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA1_CAUCR5.237e-1953.33Peptide methionine sulfoxide reductase msrA 1 OS=C... [more]
MSRA_METMA6.840e-1951.11Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_KLEP36.840e-1956.04Peptide methionine sulfoxide reductase msrA OS=Kle... [more]
MSRA_CLOAB6.840e-1951.76Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_LEPBJ8.934e-1951.22Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA_ERWCT8.934e-1953.85Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_ACIBY1.167e-1849.45Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBS1.167e-1849.45Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBC1.167e-1849.45Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB51.167e-1849.45Peptide methionine sulfoxide reductase msrA OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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