CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLAMS (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = -2
Query:  354 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 611
            D +LD+F+  HDP  LNRQG DVGTQYRS ++    EQE+  ++++ R   +L+   VT I P   ++ AE+YHQ + AK    G+
Sbjct:   67 DVILDVFFTLHDPRQLNRQGADVGTQYRSAMFPADAEQEQLFRDAIARAGDLLDGTPVTTIEPLGTWHDAEDYHQDFFAKNPGQGY 152          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSYA2 (Peptide methionine sulfoxide reductase msrA OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 35/77 (45.45%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  381 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 611
            + +LD+F+A HDPT ++RQ NDVG+QYRS + FYT E +K   +    + + +   IVTE+ PA +FY+AE+ HQ +
Sbjct:   67 EVILDVFFATHDPTTMDRQANDVGSQYRS-VVFYTDETQKPTVDRTINKLRDMGINIVTEVHPAVEFYQAEDTHQDF 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PELUB (Peptide methionine sulfoxide reductase msrA OS=Pelagibacter ubique GN=msrA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S++ +L+ F+  HDPT LN QG D GTQYRS I++ +  Q++ A+  +++    L+  +VT+    K +  AEEYHQ+YL K
Sbjct:   61 PKIISYEKILNFFFEIHDPTTLNSQGPDFGTQYRSEIFYLSDRQKEIAESVIKKVNLKLSGNVVTKSSLLKNYCPAEEYHQRYLEK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_NOCFA (Peptide methionine sulfoxide reductase msrA OS=Nocardia farcinica GN=msrA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 35/88 (39.77%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+   +  LL+ F+  HDPT  +RQGND+GT YRS I++   EQ + A++++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   60 PERTDYRALLEFFFQIHDPTTKDRQGNDIGTSYRSAIFYLDDEQRRVAEDTIADVDASGLWPGKVVTEVTPASEFWEAEPEHQDYLLR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLAM3 (Peptide methionine sulfoxide reductase msrA OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=msrA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  354 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 611
            D +LD+F+  HDP  LNRQG DVGTQYRS ++     QE+  ++++ R  ++ +   VT I P   +Y AE+YHQ + AK    G+
Sbjct:   67 DVILDVFFTLHDPRQLNRQGADVGTQYRSAMFPADAAQEQLFRDAISRAGELWDGTAVTTIEPVGTWYDAEDYHQDFFAKNPGQGY 152          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YEAST (Peptide methionine sulfoxide reductase OS=Saccharomyces cerevisiae GN=MXR1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 40/86 (46.51%), Postives = 47/86 (54.65%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK  +   L D F+  HDPT  N QG D GTQYRSG++ ++    K   +  E  Q     KI T I P K FY AEEYHQ YL K
Sbjct:   84 PKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKEEWQPKWGNKIATVIEPIKNFYDAEEYHQLYLDK 169          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCSJ (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium sp. (strain JLS) GN=msrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P +  +  LL+ F+  HDPT  NRQGNDVGT YRS I++   +Q++ A +++       +   K+VTE+ PA +F+ AE  HQ YL +
Sbjct:   60 PAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSAIFYVDDDQKRVALDTIADVDASGLWPGKVVTEVTPAGEFWEAEPEHQDYLER 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_RUTMC (Peptide methionine sulfoxide reductase msrA OS=Ruthia magnifica subsp. Calyptogena magnifica GN=msrA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.325e-13
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = -2
Query:  381 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 617
            SF TLL++F+  H+PT  N+QGND GTQYRS I++   EQ+  A + + +    ++ KIVT+I+    FY AE YHQ Y
Sbjct:   65 SFKTLLNIFFEIHNPTTKNQQGNDRGTQYRSAIFYTNDEQQSQAIDMVNQ----MSDKIVTQIIKLDVFYPAENYHQNY 139          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCVP (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=msrA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P +  +  LL+ F+  HDPT  NRQGNDVGT YRS I++   EQ + A +++       +   K+VT++ PA +F+ AE  HQ YL +
Sbjct:   60 PAQTDYRALLEFFFQIHDPTTKNRQGNDVGTSYRSEIFYVDDEQRRIALDTIADVDASGLWPGKVVTDVSPAPEFWEAEPEHQDYLER 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PICTO (Peptide methionine sulfoxide reductase msrA OS=Picrophilus torridus GN=msrA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = -2
Query:  354 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAK---ESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 629
            P++ SFD +L+++++  DPT LNRQG DVGT YR+ I++    Q++ A    ++LE   K    KIV  + P K FY AE+YH+ Y  +    G+
Sbjct:   62 PEKISFDDILEIYFSVIDPTTLNRQGEDVGTNYRTAIFYINEYQKERAVNYIKNLEASGKY--SKIVVSVEPYKNFYPAEDYHKNYFERHPEQGY 154          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_CLAMS2.518e-1343.02Peptide methionine sulfoxide reductase msrA OS=Cla... [more]
MSRA_PSYA23.288e-1345.45Peptide methionine sulfoxide reductase msrA OS=Psy... [more]
MSRA_PELUB3.288e-1341.86Peptide methionine sulfoxide reductase msrA OS=Pel... [more]
MSRA_NOCFA3.288e-1339.77Peptide methionine sulfoxide reductase msrA OS=Noc... [more]
MSRA_CLAM33.288e-1341.86Peptide methionine sulfoxide reductase msrA OS=Cla... [more]
MSRA_YEAST4.294e-1346.51Peptide methionine sulfoxide reductase OS=Saccharo... [more]
MSRA_MYCSJ4.294e-1340.91Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_RUTMC7.325e-1346.84Peptide methionine sulfoxide reductase msrA OS=Rut... [more]
MSRA_MYCVP1.249e-1240.91Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_PICTO1.632e-1240.00Peptide methionine sulfoxide reductase msrA OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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