CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPE (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma penetrans GN=msrA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 33/82 (40.24%), Postives = 51/82 (62.20%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + ++D+ +   DPT +N+QGND+G QYR+GIY     +  A +E +   Q   ++ I TE++    +Y AEEYHQ+YL K
Sbjct:   66 SLNEIIDLLFKVIDPTSINKQGNDIGRQYRTGIYSRDSNELMAIQEKINELQNNYSKLIQTEVMLVDNYYLAEEYHQKYLEK 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCGI (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium gilvum (strain PYR-GCK) GN=msrA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P +  +  LL+ F+  HDPT  NRQGND+GT YRS I++   EQ + A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PAQTDYRALLEFFFQIHDPTTKNRQGNDIGTSYRSEIFYVDEEQRQIALDTIADVDASGLWPGKVVTEVSPAPDFWEAEPEHQDYLER 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_HELHP (Peptide methionine sulfoxide reductase msrA OS=Helicobacter hepaticus GN=msrA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  372 LLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 605
            ++  F +  +P  LN QGND+GTQYR+G+YF     E   KE L+  +K  ++K VTE+   + FY AE YHQ+YL K
Sbjct:   69 IIGRFLSVINPCALNFQGNDIGTQYRNGVYFVQESDESIIKECLKLWEKKHHKKAVTEVEKLQNFYSAELYHQKYLEK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BACP2 (Peptide methionine sulfoxide reductase msrA OS=Bacillus pumilus (strain SAFR-032) GN=msrA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 42/103 (40.78%), Postives = 56/103 (54.37%), Query Frame = -2
Query:  345 FDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK-----------GGRFGFKQS 614
            ++ LL+++W + DPT    Q  D G  YR+GIY +  EQ K A+ S E+  +  +  + IVTEIL A  FY AEEYHQ Y  K            GR GF +S
Sbjct:   70 YEKLLELYWQQIDPTDDGGQFGDRGESYRTGIYVHHDEQRKLAEASKEKLNESGIFQKPIVTEILDAAPFYPAEEYHQHYYKKNKIHYERYHVGSGRAGFIES 172          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA2_RHOBA (Peptide methionine sulfoxide reductase msrA 2 OS=Rhodopirellula baltica GN=msrA2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P++ S+  LL+ F+  HDPT  NRQGND G  YRS IY+   EQ++ A +++       +   K+VTE+ P   F+ AE  HQ YL K
Sbjct:   58 PEKTSYRQLLEFFFQIHDPTTPNRQGNDRGPSYRSAIYYVDEEQKQIALDTIADVNASGLWPGKVVTEVEPVSDFWEAEPEHQDYLEK 145          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLE (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae GN=msrA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  378 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 629
            P    + TLL+ F+  HDPT  NRQGND GT YRS I++   EQ+K A +++       +   K+VTE+  A+ F+ AE  HQ YL
Sbjct:   62 PAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYL 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCLB (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium leprae (strain Br4923) GN=msrA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  378 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 629
            P    + TLL+ F+  HDPT  NRQGND GT YRS I++   EQ+K A +++       +   K+VTE+  A+ F+ AE  HQ YL
Sbjct:   62 PAITDYRTLLEFFFQIHDPTTRNRQGNDQGTSYRSAIFYLDDEQKKVALDTIAAVEASSLWPGKVVTEVSLAEDFWEAEPEHQDYL 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_NATPD (Peptide methionine sulfoxide reductase msrA OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=msrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKV--LNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            +++ LL++F+  HDPT LNRQG DVG+QYRS + ++   Q + A+  +E   +    +  IVTEI   + FYRAEE HQ Y  K
Sbjct:   66 AYEDLLEVFFTVHDPTQLNRQGPDVGSQYRSIVLYHDDTQRELAEAYIESLDEAGEYDDDIVTEIERLETFYRAEENHQNYFEK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_LEIXX (Peptide methionine sulfoxide reductase msrA OS=Leifsonia xyli subsp. xyli GN=msrA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    +  LL+ F+  HDP+  NRQGNDVG  YRS I++   EQ + A+E++       + + K+VTE+ PA  F+ A   HQ YL +
Sbjct:   58 PSRIGYRDLLEFFFQIHDPSTANRQGNDVGASYRSAIFYEDEEQRRVAEETIAEVDASGLWSGKVVTEVSPAGPFWEAGPEHQDYLER 145          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCTU (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium tuberculosis GN=msrA PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    + TLL+ F+  HDPT  +RQGND GT YRS I+++  +Q++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_MYCPE1.632e-1240.24Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCGI1.632e-1240.91Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_HELHP1.632e-1244.87Peptide methionine sulfoxide reductase msrA OS=Hel... [more]
MSRA_BACP22.131e-1240.78Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRA2_RHOBA2.131e-1242.05Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_MYCLE2.784e-1243.02Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCLB2.784e-1243.02Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_NATPD3.635e-1244.05Peptide methionine sulfoxide reductase msrA OS=Nat... [more]
MSRA_LEIXX3.635e-1239.77Peptide methionine sulfoxide reductase msrA OS=Lei... [more]
MSRA_MYCTU4.748e-1239.77Peptide methionine sulfoxide reductase msrA OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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