CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCTA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    + TLL+ F+  HDPT  +RQGND GT YRS I+++  +Q++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCBT (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    + TLL+ F+  HDPT  +RQGND GT YRS I+++  +Q++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCBP (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    + TLL+ F+  HDPT  +RQGND GT YRS I+++  +Q++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MYCBO (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium bovis GN=msrA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/88 (39.77%), Postives = 53/88 (60.23%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    + TLL+ F+  HDPT  +RQGND GT YRS I+++  +Q++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   60 PTVTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP3 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M3 GN=msrAB PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AEEYHQ YL K
Sbjct:   61 SLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEEYHQDYLKK 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_VESOH (Peptide methionine sulfoxide reductase msrA OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=msrA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = -2
Query:  381 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 617
            SF  LLD+F+  H+PT LN+QGND GTQYRS I++   +Q+  A   +     +++  IVT++     FY AE+YHQ Y
Sbjct:   65 SFKVLLDIFFEIHNPTTLNQQGNDRGTQYRSAIFYINNKQQLQAINMI----NLMSDNIVTQVTKLDCFYPAEDYHQNY 139          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_STRCO (Peptide methionine sulfoxide reductase msrA OS=Streptomyces coelicolor GN=msrA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+   +  LL+ F+  HDP+  NRQGND+G  YRS IY+   EQ++ A++++       +   K+VTE+ P   F+ AE  HQ YL +
Sbjct:   61 PEATDYRALLEFFFQIHDPSTKNRQGNDIGLSYRSAIYYVDDEQKRIAEDTIADVDASGLWPGKVVTEVEPVGPFWEAEPEHQDYLQR 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_STRAW (Peptide methionine sulfoxide reductase msrA OS=Streptomyces avermitilis GN=msrA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 34/88 (38.64%), Postives = 51/88 (57.95%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    F  +L+ F+  HDP+  NRQGND+G  YRS IY+   EQ++ A++++       +   K+VTE+ P   F+ AE  HQ YL +
Sbjct:   61 PARTDFRAILEFFFQIHDPSTKNRQGNDIGLSYRSAIYYVDDEQKRIAEDTIADVDASGLWPGKVVTEVEPVGPFWEAEPEHQDYLER 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA2_SYNY3 (Peptide methionine sulfoxide reductase msrA 2 OS=Synechocystis sp. (strain PCC 6803) GN=msrA2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 35/89 (39.33%), Postives = 57/89 (64.04%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWA-RHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P + S+  LL +F++  HDPT +NRQG D G QYRS I+  TPEQ++ A+  +++  + +  ++ I TE+     FY AE+YHQ ++ +
Sbjct:   96 PAQVSYGELLKIFFSVGHDPTQVNRQGVDQGRQYRSAIFATTPEQKQVAQAYIDQLEESQAFDQAIATEVNDFDAFYPAEDYHQDFVQR 184          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CORK4 (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=msrA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 43/95 (45.26%), Postives = 53/95 (55.79%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEI-----LPAKKFYRAEEYHQQYLAK 629
            P+E SF+ L+  F+  HDPT   RQGNDVGTQYRS IY  T ++ + A+E  E     L       I T+I      P K  Y AE+ HQQYL K
Sbjct:  110 PQEVSFEDLIRTFFEAHDPTQGFRQGNDVGTQYRSVIYAQTDDEVQKAREIAESFSHSLADAGYGGITTDISLLSDTPTKTMYLAEDEHQQYLDK 204          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_MYCTA4.748e-1239.77Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCBT4.748e-1239.77Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCBP4.748e-1239.77Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_MYCBO4.748e-1239.77Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_STRP34.748e-1246.34Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_VESOH8.099e-1244.30Peptide methionine sulfoxide reductase msrA OS=Ves... [more]
MSRA_STRCO8.099e-1238.64Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_STRAW8.099e-1238.64Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA2_SYNY38.099e-1239.33Peptide methionine sulfoxide reductase msrA 2 OS=S... [more]
MSRA_CORK41.058e-1145.26Peptide methionine sulfoxide reductase msrA OS=Cor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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