CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP8 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M18 GN=msrAB PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   61 SLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP6 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M6 GN=msrAB PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   61 SLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP1 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M1 GN=msrAB PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/82 (45.12%), Postives = 47/82 (57.32%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   61 SLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_STRGC (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=msrAB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.058e-11
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESL-ERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            K  S   +L  ++   DP  +N+QGNDVG QYR+G+Y YT + +KA  E +   Q+K L +KI  E+ P + +  AE+YHQ YL K
Sbjct:   60 KRVSLREILLYYFRVIDPLSVNKQGNDVGRQYRTGVY-YTNQADKAVIEQVFAEQEKQLGQKIAVELEPLRHYVLAEDYHQDYLKK 144          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METBU (Peptide methionine sulfoxide reductase msrA OS=Methanococcoides burtonii (strain DSM 6242) GN=msrA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 37/85 (43.53%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAA---KESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            ++  LL++ W  HDPT  + QG D G+QYRS I+++   Q +AA   +E LER  K  +  I TEI+ A +F  AE+YHQ+Y  K
Sbjct:   65 TYGELLEVLWNTHDPTTKDSQGPDHGSQYRSAIFYHDDAQREAALRSREQLERSGK-YDSTIKTEIVKASEFSPAEDYHQKYFQK 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_CAMFE (Peptide methionine sulfoxide reductase msrA/msrB OS=Campylobacter fetus GN=msrAB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.381e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  372 DPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 578
            DP  +N+QGNDVG+QYR+GIY+     + +  E ++ +Q   ++KI  E+ P K +  AE+YHQ+YL K
Sbjct:  102 DPFSVNKQGNDVGSQYRTGIYYNDSSLKNSISEFIKHEQTKYDKKIAVEVEPLKNYVLAEDYHQKYLDK 170          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_UREPA (Peptide methionine sulfoxide reductase msrA OS=Ureaplasma parvum GN=msrA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S  ++L+  +   DP  LN+QG+DVG+QYRSGIY+   + E   K+ L ++Q    +KI+ E+   + F  AEEYHQ+YL K
Sbjct:   66 SLISILEHLYQIIDPFSLNKQGDDVGSQYRSGIYYVDHDDEFIIKDFLLKKQNQTPKKIMIEVERLRNFNIAEEYHQKYLDK 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_UREP2 (Peptide methionine sulfoxide reductase msrA OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=msrA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S  ++L+  +   DP  LN+QG+DVG+QYRSGIY+   + E   K+ L ++Q    +KI+ E+   + F  AEEYHQ+YL K
Sbjct:   66 SLISILEHLYQIIDPFSLNKQGDDVGSQYRSGIYYVDHDDEFIIKDFLLKKQNQTPKKIMIEVERLRNFNIAEEYHQKYLDK 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_THET8 (Peptide methionine sulfoxide reductase msrA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=msrA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    +  LL  F+A HDPT  +RQG DVG QY   I++++ EQ++ A+  +     +  + I T++LP   FY AE YH+ Y A+
Sbjct:   63 PGVLPYADLLRYFFAVHDPTSEDRQGPDVGPQYSPAIFYHSEEQKRVAEAVMRELAPLYPKPIATKLLPFTTFYPAEAYHRDYFAR 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_THET2 (Peptide methionine sulfoxide reductase msrA OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=msrA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 33/86 (38.37%), Postives = 50/86 (58.14%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P    +  LL  F+A HDPT  +RQG DVG QY   I++++ EQ++ A+  +     +  + I T++LP   FY AE YH+ Y A+
Sbjct:   63 PGVLPYADLLRYFFAVHDPTSEDRQGPDVGPQYSPAIFYHSEEQKRVAEAVMRELAPLYPKPIATKLLPFTTFYPAEAYHRDYFAR 148          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRAB_STRP81.058e-1145.12Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP61.058e-1145.12Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP11.058e-1145.12Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRGC1.058e-1143.02Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_METBU1.381e-1143.53Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRAB_CAMFE1.381e-1143.48Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_UREPA2.356e-1142.68Peptide methionine sulfoxide reductase msrA OS=Ure... [more]
MSRA_UREP22.356e-1142.68Peptide methionine sulfoxide reductase msrA OS=Ure... [more]
MSRA_THET82.356e-1138.37Peptide methionine sulfoxide reductase msrA OS=The... [more]
MSRA_THET22.356e-1138.37Peptide methionine sulfoxide reductase msrA OS=The... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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