CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:691..1320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_BACHD (Peptide methionine sulfoxide reductase msrA OS=Bacillus halodurans GN=msrA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = -2
Query:  324 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQK--VLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQSTEKGCND 629
            P+   F+ LL ++W + DPT  + Q +D G QYR+ I++   EQ   A+ S E  +K     + IVT ILP   FY AEE HQQ+  K     +K+  EK   D
Sbjct:   65 PELFPFEKLLSLYWPQIDPTDPDGQFHDRGPQYRTAIFYENEEQRALAERSREALEKSGKFKKPIVTSILPMATFYPAEEEHQQFYKK-NPMAYKEDREKSGRD 167          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRAB_HAEIN (Peptide methionine sulfoxide reductase msrA/msrB OS=Haemophilus influenzae GN=msrAB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 33/84 (39.29%), Postives = 48/84 (57.14%), Query Frame = -2
Query:  372 ECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 623
            + S D LL  ++   DPT +N+QGND G QYR+GIY+     +    ++L + Q    + +  E+ P K +  AEEYHQ YL K
Sbjct:  102 QISLDKLLKYYFKVIDPTSVNKQGNDRGRQYRTGIYYQDGADKAVIGQALAQLQTKYKKPVQIEVQPLKNYIVAEEYHQDYLKK 185          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_RALSO (Peptide methionine sulfoxide reductase msrA OS=Ralstonia solanacearum GN=msrA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = -2
Query:  381 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ--EKAAKESLERQQKVLNRKIVTEILPAK----KFYRAEEYHQQY 629
            P    +  +LD+F+A HDPT L RQGND+G QYRS ++  +PEQ  E  A         V +  IVTE++ A      F++AE+ HQ Y
Sbjct:   72 PAVIPYREILDIFFATHDPTTLERQGNDIGPQYRSAVFAQSPEQFAEAGATIRALSAANVFDAPIVTEVVDASGGKVPFWQAEDEHQNY 160          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOPH (Peptide methionine sulfoxide reductase msrA OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=msrA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.019e-11
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = -2
Query:  372 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 611
            + LL +++   DPT +N+QG D G QYR+GIY+      +  K SLE   K  ++ I  E+     FY AEEYHQ+YL K
Sbjct:   68 EKLLRLYYEVIDPTSVNKQGGDQGIQYRTGIYYIDEADLEIIKPSLEELAKKYDKPIAIEVKQLLHFYDAEEYHQKYLDK 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CORDI (Peptide methionine sulfoxide reductase msrA OS=Corynebacterium diphtheriae GN=msrA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 41/98 (41.84%), Postives = 53/98 (54.08%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR-------KIVTEIL-----PAKKFYRAEEYHQQYLAK 629
            P + +FD L+      HDPT   RQGND GTQYRS IY   P  E+ A+ + E  +    +       +I TEIL     PA ++Y AE+ HQQYL K
Sbjct:  103 PTQVTFDELVVKAMEAHDPTQGYRQGNDTGTQYRSAIYTAGPNAEQQAQRAREIVEHYAPKLAAAGLGRITTEILPLASTPAGEYYMAEDEHQQYLHK 200          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_UREU1 (Peptide methionine sulfoxide reductase msrA OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=msrA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S  ++L+  +   DP  LN+QG D+G QYRSGIY+   E     K  L ++Q   ++KI+ E+     F  AEEYHQ+YL K
Sbjct:   66 SLTSILEHLYQIIDPFSLNKQGEDIGNQYRSGIYYVDHEDALIIKNFLLQKQNQTSKKIMIEVHKLHNFNIAEEYHQKYLDK 147          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSAB1_STRR6 (Peptide methionine sulfoxide reductase msrA/msrB 1 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=msrAB1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            KE S   +L  ++   DP  +N+QGND G QYR+GIY+       A    ++ Q+++L RKI  E+   + +  AE+YHQ YL K
Sbjct:   60 KEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRK 144          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSAB1_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 1 OS=Streptococcus pneumoniae GN=msrAB1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            KE S   +L  ++   DP  +N+QGND G QYR+GIY+       A    ++ Q+++L RKI  E+   + +  AE+YHQ YL K
Sbjct:   60 KEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRK 144          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_BACHD2.356e-1138.46Peptide methionine sulfoxide reductase msrA OS=Bac... [more]
MSRAB_HAEIN3.078e-1139.29Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_RALSO4.019e-1141.57Peptide methionine sulfoxide reductase msrA OS=Ral... [more]
MSRA_CLOPH4.019e-1142.50Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CORDI5.250e-1141.84Peptide methionine sulfoxide reductase msrA OS=Cor... [more]
MSRA_UREU18.954e-1141.46Peptide methionine sulfoxide reductase msrA OS=Ure... [more]
MSAB1_STRR68.954e-1138.82Peptide methionine sulfoxide reductase msrA/msrB 1... [more]
MSAB1_STRPN8.954e-1138.82Peptide methionine sulfoxide reductase msrA/msrB 1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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