CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB3 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB307-0294) GN=msrA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ PA  FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPAPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK  S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQ+  A+ SL+R Q+ +      R I TE+ PA  FY AE+ HQQYL K
Sbjct:  104 PKIISYKQLLQVFWENHDPAQGMRQGGDVGTQYRSAIYTLTPEQQTEAESSLQRFQQAMEQAGDKRAITTEVAPALPFYYAEDDHQQYLYK 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSE (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SE11) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.524e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDQGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHIDS (Peptide methionine sulfoxide reductase msrA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQIFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOSM (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLU (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL6 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6 GN=msrA PE=3 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO27 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.990e-18
Identity = 49/91 (53.85%), Postives = 58/91 (63.74%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_ACIB31.167e-1849.45Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_SERP51.524e-1852.75Peptide methionine sulfoxide reductase msrA OS=Ser... [more]
MSRA_ECOSE1.524e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SHIDS1.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_ECOSM1.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLU1.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOL61.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO811.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I1.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO271.990e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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