CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METM7 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            K  ++D LL++FW  HDPT  NRQG DVG QY S I+++T EQ   A++SLE+ Q  ++ KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:   65 KIITYDDLLELFWKNHDPTTPNRQGWDVGEQYSSHIFYFTDEQRIVAEKSLEKMQCYMDLKIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METM6 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=msrA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK   +D LL++FW  HDPT  NRQG DVG QY S I+++T EQ+  A++S E+ QK    KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:   64 PKILKYDDLLELFWNNHDPTTPNRQGWDVGEQYSSHIFYFTEEQKLLAEKSFEKIQKNSELKIVTAIRKASDFFPAEEYHQKYFMK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_DEIRA (Peptide methionine sulfoxide reductase msrA OS=Deinococcus radiodurans GN=msrA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 46/85 (54.12%), Postives = 58/85 (68.24%), Query Frame = -2
Query:  381 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQY 629
            P + S+  LL +F+A HDPT LNRQG DVGTQYRS ++  T EQE+ A+E +E+   + V  R IVT I PA  FY AE+YHQ Y
Sbjct:   92 PNQISYRDLLGLFFATHDPTSLNRQGADVGTQYRSALFPLTQEQEQTAREMIEQLGTEDVFGRPIVTSIEPASTFYVAEDYHQNY 176          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_DICD3 (Peptide methionine sulfoxide reductase msrA OS=Dickeya dadantii (strain 3937) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  H+P    RQGND+GTQYRS IY  T EQE AAKES +R Q+ +     +  I TEI PA  FY AE+ HQQYL K
Sbjct:  104 PAVVSYPQLLQLFWENHNPAQGMRQGNDIGTQYRSAIYTLTTEQETAAKESYQRFQQAMRDAGNDHDITTEIQPAGPFYYAEDEHQQYLHK 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOPS (Peptide methionine sulfoxide reductase msrA OS=Clostridium perfringens (strain SM101 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  FW   DPT LN+QGNDVG+QYR+GIY+  P   +    S E  QK  ++KIVTE+ P + +Y+AEEYHQ+YL K
Sbjct:   65 SLKELLAKFWTIIDPTSLNKQGNDVGSQYRTGIYYVEPSDLEEILNSKEELQKSYSKKIVTEVKPLENYYKAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOP1 (Peptide methionine sulfoxide reductase msrA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  FW   DPT LN+QGNDVG+QYR+GIY+  P   +    S E  QK  ++KIVTE+ P + +Y+AEEYHQ+YL K
Sbjct:   65 SLKELLAKFWTIIDPTSLNKQGNDVGSQYRTGIYYVDPSDLEEILNSKEELQKSYSKKIVTEVKPLENYYKAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBT (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = -2
Query:  354 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 626
            ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ P   FY AE+YHQ Y  K    G+
Sbjct:   62 QQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPTPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_METM72.599e-1851.76Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_METM62.599e-1852.33Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_DEIRA2.599e-1854.12Peptide methionine sulfoxide reductase msrA OS=Dei... [more]
MSRA_DICD33.395e-1852.75Peptide methionine sulfoxide reductase msrA OS=Dic... [more]
MSRA_CLOPS3.395e-1852.44Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOP13.395e-1852.44Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_ACIBT3.395e-1848.35Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_SHISS4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF84.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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