CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLI (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12) GN=msrA PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLC (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOBW (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / BW2952) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO8A (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O8 (strain IAI1) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO5E (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO57 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O157:H7 GN=msrA PE=3 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2 
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_SHIBS4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIB34.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_ECOLI4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLC4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOHS4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECODH4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOBW4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO8A4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO5E4.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO574.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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