CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 49/91 (53.85%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_AZOVD (Peptide methionine sulfoxide reductase msrA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.434e-18
Identity = 50/97 (51.55%), Postives = 60/97 (61.86%), Query Frame = -2
Query:  357 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 629
            P+E  + TLL +FW  HDPT   RQGND+GTQYRS IY +   Q  +A+ S ER Q  L +     + TEI  A  FY AE+YHQQYLAK  GG  G
Sbjct:  109 PQETDYRTLLKVFWEIHDPTQGMRQGNDIGTQYRSAIYCFDASQRASAEASRERFQAELAKAGYGPVTTEIADAPPFYYAEDYHQQYLAKNPGGYCG 205          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SCHPO (Probable peptide methionine sulfoxide reductase OS=Schizosaccharomyces pombe GN=SPAC29E6.05c PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = -2
Query:  372 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQ--KVLNRKIVTEILPAKKFYRAEEYHQQYLAK 626
            K  S+D +++ F+A HDPT  N+QGND+GTQYRS I+   PEQ   AK  +   Q     N+KIVT+ILPA K++ AE+YHQ YL K
Sbjct:   66 KLTSYDKIIEFFFAMHDPTTSNQQGNDIGTQYRSAIFTTNPEQATIAKRVMNEVQAKHYPNKKIVTQILPAGKWWDAEDYHQLYLEK 152          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSESM (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. tomato GN=msrA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P++ S+D+LL +FW  H+PT   RQGND+GTQYRS IY  TPEQ  AAK S +  Q  L++     I TEI  A   Y AE YHQQYLAK
Sbjct:  109 PEKISYDSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPEQLAAAKASADAFQAELSKAGLGGITTEIEEAPTVYFAETYHQQYLAK 198          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBL (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.563e-18
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = -2
Query:  381 KECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 626
            K  S+  +L++FW  HDPT LNRQGNDVG QYRS I +++PEQ+K A++S+++  +  +  IVT++   K+FY AE+YHQ Y
Sbjct:   62 KVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIPYHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDYHQNY 143          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ECOL5 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 48/91 (52.75%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND  TQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHSTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_RHORT (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P + +++ LLD+FWA HDPT ++RQG D+G QYRS I+++   QE AA  S  R  Q   L+R I T I PA  F+ AEEYHQ+Y+ K
Sbjct:   61 PDKVTYEQLLDVFWAAHDPTQVDRQGPDIGDQYRSAIFYHDAGQEAAAGASRARLEQSGALSRAIATRIEPAGPFWPAEEYHQRYIDK 148          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEU2 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 50/90 (55.56%), Postives = 57/90 (63.33%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P + S++ LL +FW  H+PT   RQGND+GTQYRS IY  TPEQ  AAK S E  Q  LN+     I TEI  A   Y AE YHQQYLAK
Sbjct:  109 PAKISYEELLKVFWEVHNPTQGMRQGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAGKGTITTEIEQAPTVYFAEAYHQQYLAK 198          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_ECO554.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO454.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO244.434e-1853.85Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_AZOVD4.434e-1851.55Peptide methionine sulfoxide reductase msrA OS=Azo... [more]
MSRA_SCHPO7.563e-1851.72Probable peptide methionine sulfoxide reductase OS... [more]
MSRA_PSESM7.563e-1854.44Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_LEPBL7.563e-1850.00Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA_ECOL59.877e-1852.75Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_RHORT1.290e-1750.00Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_PSEU21.290e-1755.56Peptide methionine sulfoxide reductase msrA OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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