CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METMP (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis GN=msrA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  S+D LLD+FW  H+PT  N+QG DVG QY S I+++  EQ+  A++SLE+ Q+  + KIVT I  A  FY AEEYHQ+Y  K
Sbjct:   64 PEIISYDELLDLFWNNHNPTTPNKQGWDVGEQYSSYIFYFDDEQKLIAEKSLEKMQENTDLKIVTIIEKAGSFYPAEEYHQKYFMK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOB6 (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain 657 / Type Ba4) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.290e-17
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S + LL+ FW   DPT+LN+QGND GTQYR+GI++   +      ES  R+QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   65 SLEELLNKFWNIIDPTVLNKQGNDRGTQYRTGIFYLNEKDLNIITESKSREQKNYKKAIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_STRGG (Peptide methionine sulfoxide reductase msrA OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = -2
Query:  357 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL----NRKIVTEILPA--KKFYRAEEYHQQYLAK--GGRFG 629
            P   S++ LL +FW  H+PT   RQGNDVGTQYRS IY ++P Q  AA  S    QKVL    +++I TEILPA  + F+ AE YHQQYL K  GG  G
Sbjct:  106 PAVVSYEELLKLFWESHNPTQGFRQGNDVGTQYRSAIYTHSPAQAAAADASRAAYQKVLTASGHQEITTEILPAEGRPFWPAEAYHQQYLDKNPGGYCG 204          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_RAT (Peptide methionine sulfoxide reductase OS=Rattus norvegicus GN=Msra PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  SF+ LL +FW  HDPT   RQGND GTQYRS +Y  +  Q +AA +S E  QKVL++     I T+I   + FY AE+YHQQYL+K
Sbjct:  123 PEHVSFEELLKVFWENHDPTQGMRQGNDCGTQYRSAVYPTSAVQMEAALKSKEEYQKVLSKHGFGPITTDIREGQVFYYAEDYHQQYLSK 212          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_NAUPA (Peptide methionine sulfoxide reductase msrA OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ-EKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S+D LLD+F+  HDPT LNRQGNDVGTQYRS I +   EQ EKA K+  E +++ LN  +VTE+ P + FY AE+YHQ Y AK
Sbjct:   65 SYDELLDIFFKIHDPTQLNRQGNDVGTQYRSIILYLDEEQKEKALKKIEELKKEGLN--VVTEVKPLEIFYPAEKYHQNYFAK 145          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METCA (Peptide methionine sulfoxide reductase msrA OS=Methylococcus capsulatus GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 629
            P +  FD LL +FW  HDPT   RQGNDVGTQYRS I+  TPEQ + A  S +  ++ L R     I TEI  A  FY AE YHQQYLA+
Sbjct:  105 PDKVGFDALLQVFWTSHDPTQGMRQGNDVGTQYRSVIFATTPEQLQWALVSRDAYERALERAGRGGITTEIRMAPDFYYAESYHQQYLAQ 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  SF+ LL +FW  HDPT   RQGND GTQYRS IY  + +Q +AA  S E  QKVL+      I T+I   + FY AE+YHQQYL+K
Sbjct:  125 PEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIYPTSAKQMEAALSSKENYQKVLSEHGFGPITTDIREGQTFYYAEDYHQQYLSK 214          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ARTCA (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=msrA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.685e-17
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = -2
Query:  348 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 611
            + +LDMF+A HDPT LNRQG DVGTQYRS +++ T E++   +E+++R Q + +  IVTE+    +F+ AEE+HQ Y AK    G+ Q
Sbjct:   67 EVILDMFFALHDPTTLNRQGYDVGTQYRSSMFYETTEEKILFEEAIDRNQALWSHPIVTEVSRLPRFHVAEEFHQDYYAKHPEQGYCQ 154          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SULSO (Peptide methionine sulfoxide reductase msrA OS=Sulfolobus solfataricus GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S+  +L++F+  HDPT LNRQGNDVGTQYRS I ++  EQ K A+E +   +K + +K+VTE+ P + FY AE+YH  +  K
Sbjct:   65 SYREILEIFFEIHDPTTLNRQGNDVGTQYRSIILYHNEEQRKIAEEMIREVEKRIGKKVVTELKPFEVFYEAEDYHHDFYDK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 46/90 (51.11%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+  SF+ LL +FW  HDPT   RQGND GTQYRS +Y  +  Q +AA  S E  QKVL++     I T+I   + FY AE+YHQQYL+K
Sbjct:  123 PEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSK 212          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_METMP1.290e-1751.16Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_CLOB61.290e-1752.44Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_STRGG1.685e-1752.53Peptide methionine sulfoxide reductase msrA OS=Str... [more]
MSRA_RAT1.685e-1751.11Peptide methionine sulfoxide reductase OS=Rattus n... [more]
MSRA_NAUPA1.685e-1757.83Peptide methionine sulfoxide reductase msrA OS=Nau... [more]
MSRA_METCA1.685e-1753.33Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_HUMAN1.685e-1752.22Peptide methionine sulfoxide reductase OS=Homo sap... [more]
MSRA_ARTCA1.685e-1747.73Peptide methionine sulfoxide reductase msrA OS=Art... [more]
MSRA_SULSO2.200e-1748.78Peptide methionine sulfoxide reductase msrA OS=Sul... [more]
MSRA_MOUSE2.200e-1751.11Peptide methionine sulfoxide reductase OS=Mus musc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
back to top