CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:691..1320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_FRASN (Peptide methionine sulfoxide reductase msrA OS=Frankia sp. (strain EAN1pec) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 48/89 (53.93%), Postives = 56/89 (62.92%), Query Frame = -2
Query:  375 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLA 629
            P + SF  LL +FW  HDPT   RQGNDVGTQYRS +Y    +Q  AA  S +  Q+VL      +I TEI PA  FY AEEYHQQYL+
Sbjct:  106 PAKVSFAELLRVFWEAHDPTQGMRQGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAGYPEITTEIAPAGPFYYAEEYHQQYLS 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ESCF3 (Peptide methionine sulfoxide reductase msrA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ S ER Q  +     +R + TEI  A  FY AE+ HQQYL K
Sbjct:  103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDSAARASRERFQAAMIAANDDRPVTTEIANATPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA1_RHOBA (Peptide methionine sulfoxide reductase msrA 1 OS=Rhodopirellula baltica GN=msrA1 PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = -2
Query:  345 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQS 629
            P + +F+ LL +F+  HDPT LNRQG D G QYRS I+ +  EQ + AK+++E+  +     IVT I PA KFY AEEYHQ Y  +    G+ Q+
Sbjct:   76 PSKTNFEELLKVFFKTHDPTTLNRQGADGGPQYRSSIFVHNDEQREIAKKTMEKLGEEYRDPIVTLIEPATKFYVAEEYHQDYYRRNPNAGYCQA 170          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_VIBPA (Peptide methionine sulfoxide reductase msrA OS=Vibrio parahaemolyticus GN=msrA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAA-KESLERQQKV---LNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL +FW +HDPT   RQGND+GTQYRS IY Y+ +Q++ A K  L+ QQ +   L   I TEI+PA  +Y AE YHQQYLAK
Sbjct:  106 SLAQLLAVFWEKHDPTQGMRQGNDLGTQYRSAIYTYSQDQQEIADKSKLQYQQALEAELRSTITTEIVPAGPYYFAETYHQQYLAK 191          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SULAC (Peptide methionine sulfoxide reductase msrA OS=Sulfolobus acidocaldarius GN=msrA PE=3 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   ++  LL++F+  HDPT  NRQGNDVG+QYRS I +++ EQ+K A+E ++  ++ L +K+VTE++P + FY AE+YH  +  K
Sbjct:   61 PSVITYRELLEIFFEIHDPTTPNRQGNDVGSQYRSIILYHSEEQKKIAEEMIKLYERKLGKKVVTELVPFEAFYEAEDYHHDFYDK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 48/91 (52.75%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASCERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PHOLL (Peptide methionine sulfoxide reductase msrA OS=Photorhabdus luminescens subsp. laumondii GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P + S++ LL +FW  HDP    RQG D+G+QYRS IY  +P+Q + A  S E  QK +     NR I TEI  A  FY AE+YHQQYL K
Sbjct:  104 PAKNSYENLLKLFWENHDPAQGMRQGGDIGSQYRSAIYTVSPQQHELALASREHFQKAMQQQSDNRPITTEITEAGPFYFAEDYHQQYLFK 194          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_METM5 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 629
            PK   +  LL++FW  HDPT  NRQG DVG QY S I+++T EQ   A++S E+ QK  + +IVT I  A  F+ AEEYHQ+Y  K
Sbjct:   64 PKIVKYTDLLNLFWNNHDPTTPNRQGWDVGEQYSSHIFYFTEEQRLLAEKSFEKIQKSSDLRIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_CLOPE (Peptide methionine sulfoxide reductase msrA OS=Clostridium perfringens GN=msrA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = -2
Query:  372 SFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 617
            S   LL  FW   DPT LN+QGNDVG+QYR+GIY+      +    S E  QK  ++KIVTE+ P + +Y+AEEYHQ+YL K
Sbjct:   65 SLKELLAKFWTIIDPTSLNKQGNDVGSQYRTGIYYVDSSDLEDILNSKEELQKSYSKKIVTEVKPLENYYKAEEYHQKYLKK 146          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ARTAT (Peptide methionine sulfoxide reductase msrA OS=Arthrobacter aurescens (strain TC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = -2
Query:  348 DTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGFKQ 611
            + +LDMF+A HDPT LNRQG DVGTQYRS +++ T E++   +E++ER Q + +  IVTE+    +F+ AEE HQ Y AK    G+ Q
Sbjct:   67 EVILDMFFALHDPTTLNRQGYDVGTQYRSSMFYTTTEEKVLFEEAIERAQALWSDPIVTEVSRLPEFHEAEEVHQNYYAKFPYQGYCQ 154          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_FRASN2.200e-1753.93Peptide methionine sulfoxide reductase msrA OS=Fra... [more]
MSRA_ESCF32.200e-1751.65Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA1_RHOBA2.200e-1746.32Peptide methionine sulfoxide reductase msrA 1 OS=R... [more]
MSRA_VIBPA2.874e-1754.65Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_SULAC3.753e-1745.35Peptide methionine sulfoxide reductase msrA OS=Sul... [more]
MSRA_SALPB3.753e-1752.75Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PHOLL3.753e-1749.45Peptide methionine sulfoxide reductase msrA OS=Pho... [more]
MSRA_METM53.753e-1750.00Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_CLOPE3.753e-1751.22Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_ARTAT4.902e-1748.86Peptide methionine sulfoxide reductase msrA OS=Art... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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