CF834180

Overview
NameCF834180
Unique NameCF834180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAB (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 47/90 (52.22%), Postives = 55/90 (61.11%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 629
            P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:  109 PQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRENFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_ERWT9 (Peptide methionine sulfoxide reductase msrA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  363 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGR 629
            P++ SF  LLD+ +A HDPT LNRQGND+GTQYRS I+  + EQ + AK ++ R Q   N  IVT I     +Y AE+YHQ Y A  G+
Sbjct:   63 PEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPVSEEQLEEAKMAIARAQSEHNDAIVTTIEAHSTWYPAEDYHQDYWAGEGQ 151          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPY (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPS (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPP (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis (strain Pestoides F) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPN (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPG (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPE (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPB (Peptide methionine sulfoxide reductase msrA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
BLAST of CF834180 vs. ExPASy Swiss-Prot
Match: MSRA_YERPA (Peptide methionine sulfoxide reductase msrA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=msrA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = -2
Query:  372 PKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 629
            P   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE+ A +S ER Q+ +      R I +EI  A  FY AE+ HQQYL K
Sbjct:  103 PAVISYQQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQEEQAHKSRERFQQAMEKAGDQRVITSEITVALPFYYAEDDHQQYLHK 193          
The following BLAST results are available for this feature:
BLAST of CF834180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 248
Match NameE-valueIdentityDescription
MSRA_PSEAB6.402e-1752.22Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_ERWT96.402e-1750.56Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_YERPY8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPS8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPP8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPN8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPG8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPE8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPB8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_YERPA8.362e-1751.65Peptide methionine sulfoxide reductase msrA OS=Yer... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834180 ID=CF834180; Name=CF834180; organism=Citrus sinensis; type=EST; length=630bp
AATTTACAATTAGACGCTTCCTTCGAATTCCATGACTACATTAGCTTGTT
CTGAGAAATAGAAACACCGCTTCACATATATACCAAGCAATCTCAGAAAC
TTTTGGAAGCTTTACATAAACATTAAAAAACATGACCAGTGAAATTACAG
ATATAGATGATGGTTTTAAGAGACTATGACTAGTTACATACCCAAGTTCA
GACACTAAATACATCTGGCATTCTTATCATAGCAAGAACACAAGTTATAA
TGGCTAAGATTCAGAAAAAAGCTGAAAATTAACTGTAATAGCAGGGTACT
ATTTAGCCATAGCACCTGATAGGATCATTGCAGCCTTTCTCAGTAGATTG
TTTGAATCCAAATCGACCCCCTTTTGCAAGATACTGCTGGTGGTATTCCT
CAGCTCGGTAGAACTTCTTGGCAGGTAGGATTTCGGTGACAATTTTCCTG
TTCAAGACCTTCTGCTGTCTCTCCAAGGACTCCTTGGCTGCCTTCTCTTG
CTCAGGAGTGTAAAAATAAATTCCAGATCTGTACTGTGTTCCAACATCAT
TACCCTGCCGATTAAGCATGGTAGGATCATGGCGAGCCCAAAACATATCA
AGCAAAGTATCGAAACTACACTCCTTAGGA
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