CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_CLOP1 (Peptide methionine sulfoxide reductase msrA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 63/127 (49.61%), Postives = 80/127 (62.99%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ GV  TEVGY  G   NP+YED+C+  T   EV  + YD    S   LL  FW   DPT LN+QGNDVG+QYR+GIY+  P   +    S E  QK  ++KIVTE+ P + +Y+AEEYHQ+YL K
Sbjct:   20 RINGVVSTEVGYANGRTENPTYEDICTKNTYFAEVCLVNYDENIISLKELLAKFWTIIDPTSLNKQGNDVGSQYRTGIYYVDPSDLEEILNSKEELQKSYSKKIVTEVKPLENYYKAEEYHQKYLKK 146          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_YERE8 (Peptide methionine sulfoxide reductase msrA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 68/130 (52.31%), Postives = 81/130 (62.31%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GY+ GY  NP+Y +VCSG T H EVVR+ +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQE  A+ES    Q+ +     +R I +EI  A  FY AE+ HQQYL K
Sbjct:   64 PGVYSTAAGYSGGYTPNPTYHEVCSGRTAHAEVVRVVFDPAIISYKQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQETQAQESQALFQQAMTKAGDSRAITSEIAAALPFYYAEDDHQQYLYK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 68/131 (51.91%), Postives = 81/131 (61.83%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            +VPGV  T  GY  G   NP+YE+VC+G T H EVV + YDP   S+  LL +FW  HDPT   RQGNDVGTQYRS IY  TPEQ + A+ S +     L  +    + TEI  A  FY AE+YHQQYL K
Sbjct:   65 QVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQLRLAEASRDSYASRLKAQGYGAVTTEIREAPAFYYAEDYHQQYLHK 195          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBT (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrA PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 62/134 (46.27%), Postives = 89/134 (66.42%), Query Frame = 2
Query:    2 VRVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGGRFGF 403
            +++ GV K   GY  G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ++AA+ +++   K  +  IVTE+ P   FY AE+YHQ Y  K    G+
Sbjct:   19 LQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQKQAAEHTIQ-TLKDDDLDIVTELSPTPTFYPAEDYHQNYYEKNPSQGY 151          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_METM6 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 63/127 (49.61%), Postives = 83/127 (65.35%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  TEVG+  G + NP+Y  VC G + H EVV + Y+PK   +D LL++FW  HDPT  NRQG DVG QY S I+++T EQ+  A++S E+ QK    KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:   23 KINGVISTEVGFMGGNIKNPTYGQVCRGRSGHIEVVNIIYNPKILKYDDLLELFWNNHDPTTPNRQGWDVGEQYSSHIFYFTEEQKLLAEKSFEKIQKNSELKIVTAIRKASDFFPAEEYHQKYFMK 149          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SULAC (Peptide methionine sulfoxide reductase msrA OS=Sulfolobus acidocaldarius GN=msrA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.583e-29
Identity = 58/127 (45.67%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            RV GV   + GY+ G + NP+YE+VC+  T H EVV++ +DP   ++  LL++F+  HDPT  NRQGNDVG+QYRS I +++ EQ+K A+E ++  ++ L +K+VTE++P + FY AE+YH  +  K
Sbjct:   20 RVKGVVSVKPGYSGGKVPNPTYEEVCTDETGHAEVVQITFDPSVITYRELLEIFFEIHDPTTPNRQGNDVGSQYRSIILYHSEEQKKIAEEMIKLYERKLGKKVVTELVPFEAFYEAEDYHHDFYDK 146          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 2.583e-29
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T+VG+  GY  NP+Y++VCSG T H EVVR+ + P+  SF+ LL +FW  HDPT   RQGND G+QYRS IY  + E   AA +S E  QKVL+      I T+I   + FY AE+YHQQYL+K
Sbjct:   85 GVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSEHGFGLITTDIREGQTFYYAEDYHQQYLSK 212          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PSE14 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.374e-29
Identity = 68/128 (53.12%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T VGY  G+  NP+YE+VCSG T H EVV + Y+P++ S+ +LL +FW  H+PT   RQGND+GTQYRS IY  TP+Q  AAK S    Q  L +     I TEI  A   Y AE YHQQYLAK
Sbjct:   71 GVVSTVVGYAGGFTPNPTYEEVCSGLTAHTEVVLVVYEPEKISYKSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPKQLDAAKASAAEFQAELRKAGLGAITTEIEEAPTVYFAEAYHQQYLAK 198          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_MOUSE (Peptide methionine sulfoxide reductase OS=Mus musculus GN=Msra PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.374e-29
Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T+VG+  G+  NP+Y++VCS  T H EVVR+ Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS +Y  +  Q +AA  S E  QKVL++     I T+I   + FY AE+YHQQYL+K
Sbjct:   85 GVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRPEHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSKHNFGPITTDIREGQVFYYAEDYHQQYLSK 212          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBL (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.407e-29
Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 2
Query:    8 VPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 376
            V G+     GY  G   NP Y  VCSGTT H E V++ +D K  S+  +L++FW  HDPT LNRQGNDVG QYRS I +++PEQ+K A++S+++  +  +  IVT++   K+FY AE+YHQ Y
Sbjct:   21 VEGIESVVSGYAAGQTKNPDYRSVCSGTTGHAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIPYHSPEQKKQAEQSIQKAGEHFSDPIVTQVEILKEFYPAEDYHQNY 143          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_CLOP18.879e-3049.61Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_YERE81.160e-2952.31Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_RHOCS1.160e-2951.91Peptide methionine sulfoxide reductase msrA OS=Rho... [more]
MSRA_ACIBT1.160e-2946.27Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_METM61.515e-2949.61Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SULAC2.583e-2945.67Peptide methionine sulfoxide reductase msrA OS=Sul... [more]
MSRA_BOVIN2.583e-2951.56Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_PSE143.374e-2953.13Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_MOUSE3.374e-2950.78Peptide methionine sulfoxide reductase OS=Mus musc... [more]
MSRA_LEPBL4.407e-2947.97Peptide methionine sulfoxide reductase msrA OS=Lep... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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