CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.949e-33
Identity = 72/132 (54.55%), Postives = 86/132 (65.15%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R+I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRRITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SHISS (Peptide methionine sulfoxide reductase msrA OS=Shigella sonnei (strain Ss046) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SHIFL (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri GN=msrA PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SHIF8 (Peptide methionine sulfoxide reductase msrA OS=Shigella flexneri serotype 5b (strain 8401) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SHIBS (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 4 (strain Sb227) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SHIB3 (Peptide methionine sulfoxide reductase msrA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLI (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12) GN=msrA PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ECOLC (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ECOHS (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O9:H4 (strain HS) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
[Close]
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ECODH (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain K12 / DH10B) GN=msrA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.570e-33
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 2 
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GYT GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ+ AA+ SLER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANATPFYYAEDDHQQYLHK 193
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ECO7I2.949e-3354.55Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_SHISS6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIFL6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIF86.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIBS6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_SHIB36.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Shi... [more]
MSRA_ECOLI6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOLC6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECOHS6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECODH6.570e-3354.55Peptide methionine sulfoxide reductase msrA OS=Esc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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