CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSAB1_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 1 OS=Streptococcus pneumoniae GN=msrAB1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.571e-18
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ GV +T VGY  G +   +Y+ +    T+H E V++ YD KE S   +L  ++   DP  +N+QGND G QYR+GIY+       A    ++ Q+++L RKI  E+   + +  AE+YHQ YL K
Sbjct:   20 RISGVLETSVGYANGQVETTNYQLLKE--TDHAETVQVIYDEKEVSLREILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEVEQLRHYILAEDYHQDYLRK 144          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPA (Peptide methionine sulfoxide reductase msrA OS=Mycobacterium paratuberculosis GN=msrA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.970e-18
Identity = 51/127 (40.16%), Postives = 72/127 (56.69%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLE--RQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T VGYT G + N +Y +   GT  H E V + YDP    +  +L+ F+  HDPT  +RQGND G  YRS I++   EQ++ A +++       +   K+VTE+ PA  F+ AE  HQ YL +
Sbjct:   25 PGVVSTRVGYTGGDVPNATYRN--HGT--HAEAVEIIYDPAVTDYRQILEFFFQIHDPTTKDRQGNDRGPSYRSAIFYTDDEQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQR 147          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_CAMFE (Peptide methionine sulfoxide reductase msrA/msrB OS=Campylobacter fetus GN=msrAB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.963e-17
Identity = 45/127 (35.43%), Postives = 71/127 (55.91%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV KT+VGY  G      Y  +    + H E V + +D    S   +L  ++   DP  +N+QGNDVG+QYR+GIY+     + +  E ++ +Q   ++KI  E+ P K +  AE+YHQ+YL K
Sbjct:   46 KIRGVIKTDVGYANGKSDKTDYHSL--HYSGHAETVHITFDENIVSLAEILAHYFRIIDPFSVNKQGNDVGSQYRTGIYYNDSSLKNSISEFIKHEQTKYDKKIAVEVEPLKNYVLAEDYHQKYLDK 170          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_AGGAC (Peptide methionine sulfoxide reductase msrA/msrB OS=Aggregatibacter actinomycetemcomitans GN=msrAB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.600e-17
Identity = 47/127 (37.01%), Postives = 67/127 (52.76%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ GV     GY  G     +Y+ +  G T+H E V++ YD  + S D LL  ++   DPT +N+QGND G QYR+GIY+     +   ++ +   Q     KI  E+ P   +  AEEYHQ YL K
Sbjct:   64 RIYGVEDAISGYANGKSDKTNYQKI--GITDHAETVKVTYDRNKVSLDKLLKYYFQVIDPTSVNKQGNDRGRQYRTGIYYQDTADKSIIEKEITALQGKYKNKIQIEVEPLHNYIVAEEYHQDYLKK 188          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP3 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M3 GN=msrAB PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.470e-16
Identity = 51/127 (40.16%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +V GV     GY  G     +Y+ +    T H E V + YD    S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AEEYHQ YL K
Sbjct:   18 QVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVTYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEEYHQDYLKK 142          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_NITWN (Peptide methionine sulfoxide reductase msrA OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=msrA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.920e-16
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R PGV  T VGYT G + + +Y +      +H E + + +DP   S+  LL+ F+  HDPT  +RQG D G  YRS I++   EQ++ A+E++       +    +VT++ PA  F+ AE  HQ YL +
Sbjct:   24 RYPGVISTRVGYTGGDVPDATYRN----HGDHAEAIEVNFDPTVTSYRQLLEFFFQIHDPTTEDRQGYDQGLSYRSAIFYTNEEQKRIAEETIAEIDASGLWPGYVVTDVEPAGPFWEAEPEHQDYLER 148          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA2_LACLA (Peptide methionine sulfoxide reductase msrA 2 OS=Lactococcus lactis subsp. lactis GN=msrA2 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.508e-16
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLN--RKIVTEILPAKKFYRAEEYHQQYLAK 385
            G+     GYT G + NP+YE V    T H E V + +D  + ++ +L++++W   DPT    Q  D G  YR  I+    EQEK AKES  + Q   N    IVT I   +KF+ AE+YHQ +  K
Sbjct:   25 GILSVISGYTGGNVENPTYEQVKKHLTGHTEAVEIIFDNSKITYQSLVELYWTLTDPTDAFGQFEDRGDNYRPVIFVENEEQEKIAKESKAQLQASGNFDSPIVTSIETVQKFWPAEDYHQGFYKK 150          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP8 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M18 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +V GV     GY  G     +Y+ +    T H E V + YD    S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   18 QVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVAYDTNRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP6 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M6 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +V GV     GY  G     +Y+ +    T H E V + YD    S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   18 QVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRAB_STRP1 (Peptide methionine sulfoxide reductase msrA/msrB OS=Streptococcus pyogenes serotype M1 GN=msrAB PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +V GV     GY  G     +Y+ +    T H E V + YD    S   LL  F+   DPT LN+QGND G+QYR+GIY+          E  + + K   +KIV E  P K F +AE+YHQ YL K
Sbjct:   18 QVDGVLDAVSGYANGRGDTTNYQLIHQ--TGHAETVEVAYDANRISLKELLLHFFRIIDPTSLNKQGNDRGSQYRTGIYYTDKADLAIIDEVFKEKAKDYKKKIVVEKAPLKHFIKAEDYHQDYLKK 142          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSAB1_STRPN4.571e-1837.80Peptide methionine sulfoxide reductase msrA/msrB 1... [more]
MSRA_MYCPA5.970e-1840.16Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRAB_CAMFE2.963e-1735.43Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_AGGAC6.600e-1737.01Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP31.470e-1640.16Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRA_NITWN1.920e-1636.43Peptide methionine sulfoxide reductase msrA OS=Nit... [more]
MSRA2_LACLA2.508e-1638.10Peptide methionine sulfoxide reductase msrA 2 OS=L... [more]
MSRAB_STRP83.276e-1639.37Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP63.276e-1639.37Peptide methionine sulfoxide reductase msrA/msrB O... [more]
MSRAB_STRP13.276e-1639.37Peptide methionine sulfoxide reductase msrA/msrB O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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