CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSAB2_STRR6 (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            RVPGVT    GY  G      YE +    T H E V + YD K+ S   +L  ++   +PT  N+QGNDVGTQYR+G+Y+   +  +   +  +   K  ++ +  E    K F  AE+YHQ YL K
Sbjct:   20 RVPGVTDAVSGYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFDEVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSAB2_STRPN (Peptide methionine sulfoxide reductase msrA/msrB 2 OS=Streptococcus pneumoniae GN=msrAB2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.278e-16
Identity = 47/127 (37.01%), Postives = 66/127 (51.97%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            RVPGVT    GY  G      YE +    T H E V + YD K+ S   +L  ++   +PT  N+QGNDVGTQYR+G+Y+   +  +   +  +   K  ++ +  E    K F  AE+YHQ YL K
Sbjct:   20 RVPGVTDAVSGYANGRGETTKYELI--NQTGHAETVHVTYDAKQISLKEILLHYFRIINPTSKNKQGNDVGTQYRTGVYYTDDKDLEVINQVFDEVAKKYDQPLAVEKENLKNFVVAEDYHQDYLKK 144          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA2_RHIME (Peptide methionine sulfoxide reductase msrA 2 OS=Rhizobium meliloti GN=msrA2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 47/123 (38.21%), Postives = 65/123 (52.85%), Query Frame = 2
Query:    8 VPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQY 376
            VPGV +T  GY  G   NP+YED   G   H EVVR+++DP   S+  L+ + +   DPT  + Q  D G  Y + I+     Q   AK    + +  L R IVT +  A KF+ AE+YHQ +
Sbjct:   43 VPGVLETISGYAGGKSANPTYEDYAKG--GHREVVRVKFDPDRVSYAELVGVLFRTTDPTDGDGQFCDRGFAYTTAIHALNERQAMDAKAEKIKAEAELGRPIVTPVEGAAKFWPAEDYHQDF 163          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_DROME (Peptide methionine sulfoxide reductase OS=Drosophila melanogaster GN=Eip71CD PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKES-LERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKG 388
            GV +T VGY  G    P+Y  +     +H EV+ + YDP   SF  LLD+FW  H+  +       +  QY S I ++  EQ++ A  S LE Q++     I TEI   + FY AE YHQ+Y  +G
Sbjct:   61 GVLRTTVGYAGGSSDLPTYRKM----GDHTEVLEIDYDPTVISFKELLDLFWNNHEYGLT----TPIKRQYASLILYHDEEQKQVAHASKLEEQERRAPEIITTEIASKENFYPAEAYHQKYRLQG 178          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_MYCPU (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma pulmonis GN=msrA PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.165e-13
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            +V GV  T+  Y  G      Y++VC G++ H E VR+ YD  + + + L  ++    +P  LN+QGND G QYR G+Y Y  +  K   +  E   K   +K   EI   +    AEEYHQ YL K
Sbjct:   21 KVKGVLDTKACYINGGFEGVKYKEVCEGSS-HVEAVRVIYDNSKITEEDLWKLYLRIINPYSLNKQGNDRGVQYRIGLYSYDKDLLKKFSDLNEAFMKSEGKKNYIEIQKVEDVTLAEEYHQNYLLK 146          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSAB2_STRR64.278e-1637.01Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSAB2_STRPN4.278e-1637.01Peptide methionine sulfoxide reductase msrA/msrB 2... [more]
MSRA2_RHIME1.054e-1438.21Peptide methionine sulfoxide reductase msrA 2 OS=R... [more]
MSRA_DROME6.830e-1437.30Peptide methionine sulfoxide reductase OS=Drosophi... [more]
MSRA_MYCPU1.165e-1336.22Peptide methionine sulfoxide reductase msrA OS=Myc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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