CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_VIBCH (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGY+ G+  NP+YE+VCSG T H EVVR+ +DP+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_VIBC3 (Peptide methionine sulfoxide reductase msrA OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 68/131 (51.91%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRK----IVTEILPAKKFYRAEEYHQQYLAK 385
            ++ GV  T VGY+ G+  NP+YE+VCSG T H EVVR+ +DP+      LL  FW RHDPT   RQGND GTQYRS IY ++ +Q + A+ S    Q +L  +    I TEILPA  +Y AE YHQQYLAK
Sbjct:   61 QLDGVISTSVGYSGGFTPNPTYEEVCSGKTGHTEVVRVIFDPERLPLTELLRAFWERHDPTQGMRQGNDRGTQYRSAIYTFSEDQREIAEASKAAYQALLTAQHRPSITTEILPAGAYYFAETYHQQYLAK 191          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 70/132 (53.03%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ  AA  S ER Q  +      R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQSTAAHASRERFQSAMADAGDERPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_DICD3 (Peptide methionine sulfoxide reductase msrA OS=Dickeya dadantii (strain 3937) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 68/130 (52.31%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T  GY  GY  NP+Y +VC+G T H E VR+ +DP   S+  LL +FW  H+P    RQGND+GTQYRS IY  T EQE AAKES +R Q+ +     +  I TEI PA  FY AE+ HQQYL K
Sbjct:   65 PGVYSTASGYCGGYTPNPTYREVCTGKTGHAEAVRVVFDPAVVSYPQLLQLFWENHNPAQGMRQGNDIGTQYRSAIYTLTTEQETAAKESYQRFQQAMRDAGNDHDITTEIQPAGPFYYAEDEHQQYLHK 194          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBL (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ G+ +T+VGY  G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   20 RIKGIVETKVGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDEKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBK (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Okra / Type B1) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.149e-31
Identity = 63/127 (49.61%), Postives = 85/127 (66.93%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ G+ +T+VGY  G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT+LN+QGND GTQYR+GI++   +      +S  ++QK   + IVTE+ P K FY AEEYHQ+YL K
Sbjct:   20 RIKGIVETKVGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFYLDQKDLNVIIKSKSQEQKNYRKPIVTEVEPLKCFYEAEEYHQKYLKK 146          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_METM7 (Peptide methionine sulfoxide reductase msrA OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.031e-31
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 2
Query:    8 VPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            V GV  TEVGY  G + NP+Y  VC G + H EVV++ YD K  ++D LL++FW  HDPT  NRQG DVG QY S I+++T EQ   A++SLE+ Q  ++ KIVT I  A  F+ AEEYHQ+Y  K
Sbjct:   24 VDGVISTEVGYMGGNVKNPTYGQVCRGKSGHIEVVKVSYDSKIITYDDLLELFWKNHDPTTPNRQGWDVGEQYSSHIFYFTDEQRIVAEKSLEKMQCYMDLKIVTAIKKASDFFPAEEYHQKYFMK 149          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 69/132 (52.27%), Postives = 81/132 (61.36%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP    ++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQSAAAHASRERFQSAMAAAGNHRPITTEITHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PSEAB (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 69/129 (53.49%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T VGY  GY  NP+Y++VCSG T H+EVV + Y+P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:   70 PGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAAMASRENFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PASMU (Peptide methionine sulfoxide reductase msrA OS=Pasteurella multocida GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.049e-30
Identity = 61/125 (48.80%), Postives = 85/125 (68.00%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYL 379
            ++ GV K   GY  G   NP+Y++VC+G T H E V++++D    S++ LLD+F++ H+PT LN QG DVGTQYR+GIY+   EQE+ A + +   Q     KIVTE+LPA+ FY AE+YHQ YL
Sbjct:   21 QIKGVEKATSGYINGTTENPTYKEVCTGETGHAEAVKVEFDATVISYEKLLDIFFSIHNPTQLNHQGEDVGTQYRTGIYYLNDEQEQLANKKIAELQPHFAEKIVTEVLPAQTFYPAEDYHQGYL 145          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_VIBCH6.149e-3151.91Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_VIBC36.149e-3151.91Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_SALAR6.149e-3153.03Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_DICD36.149e-3152.31Peptide methionine sulfoxide reductase msrA OS=Dic... [more]
MSRA_CLOBL6.149e-3149.61Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOBK6.149e-3149.61Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_METM78.031e-3151.59Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_SALSV1.049e-3052.27Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PSEAB1.049e-3053.49Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PASMU1.049e-3048.80Peptide methionine sulfoxide reductase msrA OS=Pas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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