CF834181

Overview
NameCF834181
Unique NameCF834181
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2698 contig Csv1_Contig2698:565..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALEP (Peptide methionine sulfoxide reductase msrA OS=Salmonella enteritidis PT4 (strain P125109) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALDC (Peptide methionine sulfoxide reductase msrA OS=Salmonella dublin (strain CT_02021853) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALCH (Peptide methionine sulfoxide reductase msrA OS=Salmonella choleraesuis GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 69/129 (53.49%), Postives = 83/129 (64.34%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            PGV  T VGY  GY  NP+Y++VCSG T H+EVV + Y+P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q+ AA  S E  Q  L +    +I TEI     FY AE YHQQYLAK
Sbjct:   70 PGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQKAAALASRESFQAELAKAGYDRITTEIADVPPFYYAEAYHQQYLAK 198          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_FRASN (Peptide methionine sulfoxide reductase msrA OS=Frankia sp. (strain EAN1pec) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 69/130 (53.08%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLA 382
            +VPGV  T VGY  G   NP+YE+ CSG T H E V + +DP + SF  LL +FW  HDPT   RQGNDVGTQYRS +Y    +Q  AA  S +  Q+VL      +I TEI PA  FY AEEYHQQYL+
Sbjct:   65 QVPGVYSTAVGYAGGITPNPTYEEACSGLTGHTEAVLVVFDPAKVSFAELLRVFWEAHDPTQGMRQGNDVGTQYRSAVYTTGEDQAAAALASRDAFQRVLTAAGYPEITTEIAPAGPFYYAEEYHQQYLS 194          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ACIC5 (Peptide methionine sulfoxide reductase msrA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.789e-30
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLER--QQKVLNRKIVTEILPAKKFYRAEEYHQQYLAKGG 391
            GV     GY  G L NP+Y DVC+  T H EVV + ++P E  F+ LL+ F+  HDPT LNRQG D GTQYRS I++++PEQ+  A+  ++R   +K   R IVT+++PA  F+RAEEYHQ+YL K G
Sbjct:   23 GVQDVAAGYEGGKLDNPTYRDVCTDLTGHAEVVEIDFNPDEIRFEQLLEAFFGLHDPTQLNRQGPDWGTQYRSVIFYHSPEQQTVAQAFIDRLTAEKRFPRPIVTQVVPAATFWRAEEYHQRYLEKRG 150          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_SALA4 (Peptide methionine sulfoxide reductase msrA OS=Salmonella agona (strain SL483) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 69/132 (52.27%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVL-----NRKIVTEILPAKKFYRAEEYHQQYLAK 385
            ++PGV  T  GY  GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ  AA  S ER Q  +     +R I TEI  A  FY AE+ HQQYL K
Sbjct:   62 QLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQAAMAAAGDHRPITTEIAHATPFYYAEDEHQQYLHK 193          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PSEU2 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 70/128 (54.69%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   14 GVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK 385
            GV  T  GY  G+  NP+YE+VCSG T H EVV + Y+P + S++ LL +FW  H+PT   RQGND+GTQYRS IY  TPEQ  AAK S E  Q  LN+     I TEI  A   Y AE YHQQYLAK
Sbjct:   71 GVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPAKISYEELLKVFWEVHNPTQGMRQGNDIGTQYRSVIYCTTPEQLDAAKASAETFQAQLNKAGKGTITTEIEQAPTVYFAEAYHQQYLAK 198          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_PSEMY (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas mendocina (strain ymp) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 73/136 (53.68%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   11 PGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNR----KIVTEILPAKKFYRAEEYHQQYLAK--GGRFG 400
            PGV  T VGY  G+  NP+YE+VCSG T H EVV + +DP++ SFD LL +FW  H+PT   RQGND GTQYRS IY     Q +AA  S  R Q  L++     I TEI  A  FY AE YHQQYLAK  GG  G
Sbjct:   70 PGVFSTAVGYAGGFTPNPTYEEVCSGLTGHTEVVLVVFDPQQTSFDALLKVFWEAHNPTQGMRQGNDQGTQYRSAIYCQDHAQLEAALASQARFQAELDKAGLGSITTEICEAPIFYYAETYHQQYLAKNPGGYCG 205          
BLAST of CF834181 vs. ExPASy Swiss-Prot
Match: MSRA_ALKMQ (Peptide methionine sulfoxide reductase msrA OS=Alkaliphilus metalliredigens (strain QYMF) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.337e-30
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 2
Query:    5 RVPGVTKTEVGYT*GYLHNPSYEDVCSGTTNHNEVVRLQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQEKAAKESLERQQKVLNRKIVTEILPAKKFYRAEEYHQQYLAK 385
            R+ GV +T+VGY  G++ NPSYE+VCS  T H EV  +++D  + S + LL+ FW   DPT+ NRQG D+G+QYR+GIY+   E      +S E QQK  +  IVTEI P K FY AEEYHQ+YL K
Sbjct:   20 RIDGVVETKVGYANGHVENPSYEEVCSSQTGHAEVCYIKFDETKISLEILLNGFWKIIDPTVENRQGPDIGSQYRTGIYYGHEEDLDTIIKSKEMQQKKYDANIVTEIEPLKAFYDAEEYHQKYLKK 146          
The following BLAST results are available for this feature:
BLAST of CF834181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_SALEP1.789e-3052.27Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALDC1.789e-3052.27Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALCH1.789e-3052.27Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PSEA81.789e-3053.49Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_FRASN1.789e-3053.08Peptide methionine sulfoxide reductase msrA OS=Fra... [more]
MSRA_ACIC51.789e-3050.00Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_SALA42.337e-3052.27Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_PSEU22.337e-3054.69Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PSEMY2.337e-3053.68Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_ALKMQ2.337e-3051.18Peptide methionine sulfoxide reductase msrA OS=Alk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834181 ID=CF834181; Name=CF834181; organism=Citrus sinensis; type=EST; length=639bp
CGTTAGAGTGCCAGGTGTCACCAAGACCGAAGTTGGGTACACCTAAGGCT
ACTTGCATAACCCTAGCTACGAGGACGTGTGTAGTGGGACTACCAATCAT
AATGAAGTTGTTAGGCTTCAGTATGATCCTAAGGAGTGTAGTTTCGATAC
TTTGCTTGATATGTTTTGGGCTCGCCATGATCCTACCATGCTTAATCGGC
AGGGTAATGATGTTGGAACACAGTACAGATCTGGAATTTATTTTTACACT
CCTGAGCAAGAGAAGGCAGCCAAGGAGTCCTTGGAGAGACAGCAGAAGGT
CTTGAACAGGAAAATTGTCACCGAAATCCTACCTGCCAAGAAGTTCTACC
GAGCTGAGGAATACCACCAGCAGTATCTTGCAAAAGGGGGTCGATTTGGA
TTCAAACAATCTACTGAGAAAGGCTGCAATGATCCTATCAGGTGCTATGG
CTAAATAGTACCCTGCTATTACAGTTAATTTTCAGCTTTTTTCTGAATCT
TAGCCATTATAACTTGTGTTCTTGCTATGATAAGAATGCCAGATGTATTT
AGTGTCTGAACTTGGGTATGTAACTAGTCATAGTCTCTTAAACCATCATC
TATATCTGTAATTTCACTGGTCATGTTTTTTAATGTTTA
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