CF834187

Overview
NameCF834187
Unique NameCF834187
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:679..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNV (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=ILV2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG--PYLLDVIFPHQEHVLPMIPSGGAFKD 406
            VA P+  ++DIDGD SF M   ELAT     + +K+LL NN+  GMV QW+D FY+   +HT + +        P+ +K +E+ G  G + T+  DL   ++  L+  G  P +L+ +    EHV PMIP+G A  +
Sbjct:  579 VAAPEKYVIDIDGDASFSMTAMELATASQYDIGVKVLLFNNEFQGMVEQWQDLFYENRYSHTRMTN--------PDFVKLSESMGAKGLRCTKLEDLPRMMKEFLEYDGKRPIVLECLV-SSEHVYPMIPAGKALHE 706          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_CRYNE (Acetolactate synthase, mitochondrial OS=Cryptococcus neoformans GN=ILV2 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 51/137 (37.23%), Postives = 77/137 (56.20%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPG--PYLLDVIFPHQEHVLPMIPSGGAFKD 406
            VA P+  ++DIDGD SF M   ELAT     + +K+LL NN+  GMV QW+D FY+   +HT + +        P+ +K +E+ G  G + T+  DL   ++  L+  G  P +L+ +    EHV PMIP+G A  +
Sbjct:  579 VAAPEKYVIDIDGDASFSMTAMELATASQYDIGVKVLLFNNEFQGMVEQWQDLFYENRYSHTRMTN--------PDFVKLSESMGTKGLRCTKLEDLPRMMKEFLEYDGKRPIVLECLV-SSEHVYPMIPAGKALHE 706          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_BACSU (Acetolactate synthase large subunit OS=Bacillus subtilis GN=ilvB PE=1 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 3.099e-17
Identity = 44/137 (32.12%), Postives = 77/137 (56.20%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 412
            +A  DA +V + GDG F M +QEL  I+   LP+K+++LNN  LGMV QW++ FY+   + +            P+ +K +EA GI G +++ +A+ +  ++  L +  P ++DV    +E V PM+  G    +++
Sbjct:  441 LAEKDATVVAVVGDGGFQMTLQELDVIRELNLPVKVVILNNACLGMVRQWQEIFYEERYSESKFASQ-------PDFVKLSEAYGIKGIRISSEAEAKEKLEEALTSREPVVIDVRVASEEKVFPMVAPGKGLHEMV 570          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVI_HAEIN (Acetolactate synthase large subunit OS=Haemophilus influenzae GN=ilvI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.178e-16
Identity = 46/138 (33.33%), Postives = 71/138 (51.45%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYL-LDVIFPHQEHVLPMIPSGGAFKDVI 412
            +A+P+  +V + GDGS  MN+QEL+T     +P+ I+ LNN  LGMV QW+D  Y    + TY+          P+  K AE+ G  G ++    +L + +Q         + +D+     EHV PM   GGA  ++I
Sbjct:  434 LAHPEGTVVCVTGDGSIQMNIQELSTATQYGIPVVIICLNNHFLGMVKQWQDLIYSGRHSQTYMNS-------LPDFAKLAESYGHVGIKIATPDELESKLQEAFSIKNKLVFVDINVDESEHVYPMQIRGGAMNEMI 564          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_CORGL (Acetolactate synthase large subunit OS=Corynebacterium glutamicum GN=ilvB PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.538e-16
Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 2
Query:   11 PDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD-TPGPYLLDVIFPHQEHVLPMIPSGGAFKDV 409
            PD  +  IDGDG F M  QEL T  VE  PIKI L+NN +LGMV QW+  FY+   ++T L     + E  P+ +  +E  G    +VT+  ++  AIQ   +    P ++D I      V PM+ +G +  D+
Sbjct:  457 PDKEVWAIDGDGCFQMTNQELTTAAVEGFPIKIALINNGNLGMVRQWQTLFYEGRYSNTKL---RNQGEYMPDFVTLSEGLGCVAIRVTKAEEVLPAIQKAREINDRPVVIDFIVGEDAQVWPMVSAGSSNSDI 587          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVI_BUCSC (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schlechtendalia chinensis GN=ilvI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.009e-16
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGR 430
            +A P+  ++ + GDGS  MN+QEL+T    +LPI IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    +L   +Q  L+         +D+     EHV PM    G   +++   +G+
Sbjct:  435 LAFPNETVICVTGDGSIQMNIQELSTAMQYELPILILNLNNKSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHSGISINTPKELEKKLQLALEKLQNGHLVFVDIKIDASEHVYPMQIRDGGMNNMLLRKNGQ 573          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVI_SALTY (Acetolactate synthase isozyme 3 large subunit OS=Salmonella typhimurium GN=ilvI PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 49/147 (33.33%), Postives = 76/147 (51.70%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRT 433
            +A P  ++V + GDGS  MN+QEL+T    +LP+ +L LNN++LGMV QW+D  Y    + +Y+       +  P+ ++ AEA G  G Q+ R  +L + +   L+         +DV     EHV PM   GG   ++      RT
Sbjct:  435 MALPKEMVVCVTGDGSIQMNIQELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGLQINRPDELESKLSEALEHVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVI_BUCBP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ilvI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 52/135 (38.52%), Postives = 71/135 (52.59%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ---TMLDTPGPYLLDVIFPHQEHVLPM-IPSGG 394
            +A P   ++ I GDGS  MN+QEL+T    KL I IL LNN+ LGMV QW+D  Y    +H+Y+       +  PN +K AE+ G  G  +    DL   ++     LD      +D+    +EHV PM I SGG
Sbjct:  435 LALPKETVLCITGDGSIQMNIQELSTAMQYKLSILILNLNNRSLGMVKQWQDIIYSGRHSHSYM-------KSLPNFIKLAESYGHIGISIHNPEDLEKKLKLALLKLDQGNLVFVDITIDPEEHVYPMQIRSGG 562          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_SYNPX (Acetolactate synthase large subunit OS=Synechococcus sp. (strain WH8102) GN=ilvB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 44/130 (33.85%), Postives = 69/130 (53.08%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 391
            VA PD  +V I GD S +MN+QEL T+    LP+K++++NN   GMV QW++ FY    +       S      P+ +  A + G+ G ++T +  L   +   L +P P ++DV     E+  PM+P G
Sbjct:  450 VAMPDRQVVCIAGDASILMNIQELGTLAAYGLPVKVVIVNNHWQGMVRQWQESFYDERYS------ASDMLNGMPDFIALARSFGVDGVKITDRELLHRDLAAALQSPTPTMIDVHVRRGENCYPMVPPG 573          
BLAST of CF834187 vs. ExPASy Swiss-Prot
Match: ILVB_METAO (Probable acetolactate synthase large subunit OS=Methanococcus aeolicus GN=ilvB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.476e-16
Identity = 45/137 (32.85%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    2 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 412
            VA PD+ ++ I GDG F+MN QEL TI    +P+ I + +N+ LGMV QW++ FY   +     G         P+ +K AE+ GI   ++    ++  A++  ++   PYLLD         L M+P G    ++I
Sbjct:  442 VAKPDSKVICITGDGGFMMNCQELGTIAEYNIPVVICIFDNRTLGMVYQWQNLFYGKRQCSVNFGGA-------PDFIKLAESYGIKARRIESPNEINEALKEAINCDEPYLLDFAI-DPSSALSMVPPGAKLTNII 570          
The following BLAST results are available for this feature:
BLAST of CF834187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVB_CRYNV1.643e-1837.23Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_CRYNE1.643e-1837.23Acetolactate synthase, mitochondrial OS=Cryptococc... [more]
ILVB_BACSU3.099e-1732.12Acetolactate synthase large subunit OS=Bacillus su... [more]
ILVI_HAEIN1.178e-1633.33Acetolactate synthase large subunit OS=Haemophilus... [more]
ILVB_CORGL1.538e-1636.57Acetolactate synthase large subunit OS=Corynebacte... [more]
ILVI_BUCSC2.009e-1632.88Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_SALTY2.624e-1633.33Acetolactate synthase isozyme 3 large subunit OS=S... [more]
ILVI_BUCBP3.427e-1638.52Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SYNPX4.476e-1633.85Acetolactate synthase large subunit OS=Synechococc... [more]
ILVB_METAO4.476e-1632.85Probable acetolactate synthase large subunit OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834187 ID=CF834187; Name=CF834187; organism=Citrus sinensis; type=EST; length=461bp
TGTTGCAAATCCTGATGCCATCATTGTAGATATTGATGGTGATGGGAGTT
TCATCATGAACGTCCAGGAGTTGGCGACTATTAAGGTAGAGAAACTCCCC
ATCAAGATATTGCTGTTGAATAATCAGCACTTGGGCATGGTGATGCAATG
GGAGGATCGGTTTTACAAGGCAAATAGGGCTCACACGTATTTGGGAGATC
CATCAAGAGAGTCTGAAATATTTCCGAATATGTTGAAGTTTGCAGAAGCC
TGTGGAATACCTGGAGCACAAGTAACAAGGAAGGCAGATCTGAGAGCCGC
AATTCAGACTATGTTGGACACTCCTGGACCATACCTTCTGGACGTCATCT
TTCCTCATCAAGAGCATGTCCTGCCTATGATCCCCAGTGGTGGAGCTTTT
AAAGATGTGATAACTGAAGGTGATGGAAGAACACAGTATTAACGACAAGC
TGAAGCAGCAT
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