CF834188

Overview
NameCF834188
Unique NameCF834188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6751 contig Csv1_Contig6751:512..1138. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVG_ECOLI (Acetolactate synthase isozyme 2 large subunit OS=Escherichia coli (strain K12) GN=ilvG PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 8.913e-27
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            VA P+  +V I GDGSF+MNVQEL T+K ++LP+KI+LL+NQ LGMV QW+  F++   + T L D        P+ L  A A GI G  +TRK  + AA+ TML++ GPYLL V     E+V P++P G +  +++
Sbjct:  415 VARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKIVLLDNQRLGMVRQWQQLFFQERYSETTLTDN-------PDFLMLASAFGIHGQHITRKDQVEAALDTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEML 544          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_SCHPO (Acetolactate synthase, mitochondrial OS=Schizosaccharomyces pombe GN=ilv1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.423e-24
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            VA P  I++DIDGD SF M   ELAT++   +P+KIL+LNN+  GMV QW++ FY+   +HT+  +        PN +K A+A GI   +V ++ DL   ++  L T GP L++V+   +EHV P +P G A    I
Sbjct:  535 VAAPKDIVIDIDGDASFSMTGMELATVRQFDIPVKILILNNEEQGMVTQWQNLFYEKRYSHTHQKN--------PNFVKLADAMGIKALRVEKREDLAKKMKEFLSTKGPVLMEVLVAQKEHVYPFVPGGKALHQFI 663          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_CYACA (Acetolactate synthase large subunit OS=Cyanidium caldarium GN=ilvB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.633e-22
Identity = 54/130 (41.54%), Postives = 77/130 (59.23%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +ANP+ +I+ I GD SF MN+QEL TI   +L IKI ++NNQ  GMV QW+  FY    AH+ +          P+ ++ A + GI G +VT   DL++ I+ ++ TPGP L+D I    E+  PMI  G
Sbjct:  444 IANPNDLIICITGDASFQMNLQELGTIAQYELDIKIFIINNQWQGMVRQWQQAFYDQRYAHSNMAKGQ------PDFVQLANSYGIRGIRVTTSKDLKSKIERIISTPGPLLIDCIVATSENCYPMIAPG 567          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_YEAST (Acetolactate synthase catalytic subunit, mitochondrial OS=Saccharomyces cerevisiae GN=ILV2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.473e-21
Identity = 51/137 (37.23%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            VA P+++++DIDGD SF M + EL++      P+KIL+LNN+  GMV QW+  FY+   +HT+        ++ P+ +K AEA G+ G +V ++ +L A ++  + T GP LL+V    +  VLPM+  G    + I
Sbjct:  537 VAKPESLVIDIDGDASFNMTLTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTH--------QLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFVSTKGPVLLEVEVDKKVPVLPMVAGGSGLDEFI 665          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_PORYE (Acetolactate synthase large subunit OS=Porphyra yezoensis GN=ilvB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.923e-21
Identity = 52/130 (40.00%), Postives = 78/130 (60.00%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            VA+P+ +++ I GD SF MN+QEL TI   +LP+KI+++NN+  GMV QW+  FY    +H      SR +E  P+  K AEA GI    +  + ++++A+Q  +D PGP LLD      E+  PM+  G
Sbjct:  442 VAHPNDVVICISGDSSFQMNMQELGTIAQYQLPVKIIIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPDFQKLAEAFGIKAFTINNRQNMQSALQVAIDYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_PORUM (Acetolactate synthase large subunit OS=Porphyra umbilicalis GN=ilvB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD      E+  PM+  G
Sbjct:  442 VAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_PORPU (Acetolactate synthase large subunit OS=Porphyra purpurea GN=ilvB PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.247e-20
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            VA+P+ +++ + GD SF MN+QEL TI   KLPIKI+++NN+  GMV QW+  FY    +H      SR +E  PN  K AEA GI    V  + ++ ++++  +  PGP LLD      E+  PM+  G
Sbjct:  442 VAHPNELVICVSGDSSFQMNMQELGTIAQYKLPIKIVIINNRWQGMVRQWQQAFYGERYSH------SRMTEGAPNFQKLAEAFGIKAFTVNNRQNMESSLKDAMKYPGPVLLDCQVTENENCYPMVAPG 565          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_METJA (Probable acetolactate synthase large subunit OS=Methanocaldococcus jannaschii GN=ilvB PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.934e-19
Identity = 46/137 (33.58%), Postives = 80/137 (58.39%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            VA P A ++ I GDG F+MN QELATI    +P+ I + +N+ LGMV QW++ +Y   ++  +LG+        P+ +K AE+ G+   ++    +++  ++  + +  PYLLD++    E  LPM+P GG   +++
Sbjct:  434 VAKPYANVISITGDGGFLMNSQELATISEYDIPVVICIFDNRTLGMVYQWQNLYYGQRQSEVHLGES-------PDFVKLAESYGVKADRIISPDEIKEKLKEAILSNEPYLLDIVIDPAE-ALPMVPPGGRLTNIV 562          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_GUITH (Acetolactate synthase large subunit OS=Guillardia theta GN=ilvB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.599e-18
Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +A+P+  ++ I GD SF MN+QEL T+    LPIKI ++NN+  GMV QW+  FY    +H      S   +  PN  K AEA G+   ++  + DL+  I+  LD  GP L+D+     E+  PM+  G
Sbjct:  441 IAHPNEQVICISGDASFQMNIQELGTVSQYGLPIKIFIINNKWQGMVRQWQQAFYGERYSH------SNMEKGAPNFTKVAEAFGLRSLKIKSRNDLKLRIKEALDYDGPILVDIQVIADENCYPMVAPG 564          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_ECOLI (Acetolactate synthase isozyme 1 large subunit OS=Escherichia coli (strain K12) GN=ilvB PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.395e-18
Identity = 50/140 (35.71%), Postives = 81/140 (57.86%), Query Frame = -1
Query:  211 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKAN-RAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITE 627
            +ANPD  ++   GDGS +MN+QE+AT    +L +KI+L+NN+ LG+V Q +  FY+    A TY G          N ++ A   G+    +  +AD +A++Q +++ PGP L+ V    +E V PM+P G A  +++ E
Sbjct:  431 LANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGK--------INFMQIAAGFGLETCDLNNEADPQASLQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE 562          
The following BLAST results are available for this feature:
BLAST of CF834188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVG_ECOLI8.913e-2745.26Acetolactate synthase isozyme 2 large subunit OS=E... [more]
ILVB_SCHPO1.423e-2440.88Acetolactate synthase, mitochondrial OS=Schizosacc... [more]
ILVB_CYACA8.633e-2241.54Acetolactate synthase large subunit OS=Cyanidium c... [more]
ILVB_YEAST1.473e-2137.23Acetolactate synthase catalytic subunit, mitochond... [more]
ILVB_PORYE1.923e-2140.00Acetolactate synthase large subunit OS=Porphyra ye... [more]
ILVB_PORUM1.247e-2040.00Acetolactate synthase large subunit OS=Porphyra um... [more]
ILVB_PORPU1.247e-2040.00Acetolactate synthase large subunit OS=Porphyra pu... [more]
ILVB_METJA8.934e-1933.58Probable acetolactate synthase large subunit OS=Me... [more]
ILVB_GUITH2.599e-1837.69Acetolactate synthase large subunit OS=Guillardia ... [more]
ILVB_ECOLI3.395e-1835.71Acetolactate synthase isozyme 1 large subunit OS=E... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834188 ID=CF834188; Name=CF834188; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTCCTTTTTAAATAACATTGTAACTCATAGAGTTTGTTTGTT
AAACAAACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACACTGCC
ACACACTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAAATACA
TAGCCAAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTGTGTTC
TTCCATCACCTTCAGTTATCACATCTTTAAAAGCTCCACCACTGGGGATC
ATAGGCAGGACATGCTCTTGATGAGGAAAGATGACGTCCAGAAGGTATGG
TCCAGGAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGCCTTCC
TTGTTACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCAACATA
TTCGGAAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTGTGAGC
CCTATTTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCCCAAGT
GCTGATTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCTTAATA
GTCGCCAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCAATATC
TACAATGATGGCATCAGGATTTGCAAC
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