CF834188

Overview
NameCF834188
Unique NameCF834188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_MYCLE (Acetolactate synthase OS=Mycobacterium leprae GN=ilvB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 50/137 (36.50%), Postives = 73/137 (53.28%), Query Frame = -1
Query:  220 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDV 627
            +A P+A +  IDGDG F M  QELAT  +E  PIK+ L+NN +LGMV QW+  FY+   + T   D +  S   P+ +K AEA G  G +   + D+   I Q       P ++D I      V PM+ +G +  ++
Sbjct:  474 IARPEAEVWAIDGDGCFQMTNQELATCAIEGAPIKVALINNGNLGMVRQWQALFYQERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCECEEDVVDVINQARAINNRPVVIDFIVGADAQVWPMVAAGASNDEI 607          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_MYCTU (Acetolactate synthase OS=Mycobacterium tuberculosis GN=ilvB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +A P   +  IDGDG F M  QELAT  VE +P+K+ L+NN +LGMV QW+  FY    + T   D +  S   P+ +K AEA G  G +  R+ D+   I Q       P ++D I      V PM+ +G
Sbjct:  467 IALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAG 594          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_MYCBO (Acetolactate synthase OS=Mycobacterium bovis GN=ilvB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.577e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI-QTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +A P   +  IDGDG F M  QELAT  VE +P+K+ L+NN +LGMV QW+  FY    + T   D +  S   P+ +K AEA G  G +  R+ D+   I Q       P ++D I      V PM+ +G
Sbjct:  467 IALPGTEVWAIDGDGCFQMTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQT---DLATHSHRIPDFVKLAEALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAG 594          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAI (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ilvI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 47/139 (33.81%), Postives = 70/139 (50.36%), Query Frame = -1
Query:  220 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGP---YLLDVIFPHQEHVLPMIPSGGAFKDV 627
            +A P   ++ I GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K +E+ G  G Q+T   +L   +   L          +DV   + EHV PM   GG   ++
Sbjct:  432 LALPKETVICITGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLSESYGHFGIQITEPIELEEKLMLALSKLSDGHLVFVDVQIDNSEHVYPMQIQGGGMNEM 563          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVI_ECOLI (Acetolactate synthase isozyme 3 large subunit OS=Escherichia coli (strain K12) GN=ilvI PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 47/147 (31.97%), Postives = 76/147 (51.70%), Query Frame = -1
Query:  196 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLD---TPGPYLLDVIFPHQEHVLPMIPSGGAFKDVITEGDGRT 627
            +A P+  +V + GDGS  MN+QEL+T    +LP+ ++ LNN++LGMV QW+D  Y    + +Y+       +  P+ ++ AEA G  G Q++   +L + +   L+         +DV     EHV PM   GG   ++      RT
Sbjct:  435 MALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYM-------QSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT 574          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_MYCAV (Acetolactate synthase OS=Mycobacterium avium GN=ilvB PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 50/131 (38.17%), Postives = 69/131 (52.67%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQ-TMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +  P+A +  IDGDG F M  QELAT  VE +PIK+ L+NN +LGMV QW+  FY+   + T LG P       P+ +K AEA G  G +  R+ D+   I         P ++  I      V PM+ +G
Sbjct:  470 MGRPEAEVWAIDGDGCFQMTNQELATCAVEGIPIKVALINNGNLGMVRQWQTLFYEERYSQTDLGHPLAP---HPDFVKLAEALGCVGLRCEREEDVVDVINAARAINDRPVVIAFIVGADAQVWPMVAAG 597          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_LACLA (Acetolactate synthase large subunit OS=Lactococcus lactis subsp. lactis GN=ilvB PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15
Identity = 45/130 (34.62%), Postives = 71/130 (54.62%), Query Frame = -1
Query:  238 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSG 627
            +A P+  ++   GDG F M  QELA +    + IK++L+NN  LGMV QW++ FY+  R+ +         ++ PN    AEA GI   ++     L   ++ + +   P L++V+    EHVLPMIP+G
Sbjct:  433 LAQPNKNVIVFVGDGGFQMTNQELALLNGYGIAIKVVLINNHSLGMVRQWQESFYEERRSQSVF-------DVEPNFQLLAEAYGIKHVKLDNPKTLADDLKIITEDE-PMLIEVLISKSEHVLPMIPAG 554          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVI_BUCAP (Acetolactate synthase large subunit OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ilvI PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = -1
Query:  220 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAI---QTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDV 627
            +A P A ++ + GDGS  MN+QEL+T +   L + IL LNN  LGMV QW+D  Y    +H+Y+       +  P+ +K  E+ G  G +V    +L   +      L       LD+     EHV PM   GG   ++
Sbjct:  432 LALPKATVICVTGDGSIQMNIQELSTARQYNLAVLILNLNNSSLGMVKQWQDMIYSGRHSHSYM-------DSLPDFVKLVESYGHIGLKVKTNEELEEKLILALKKLSEGNLVFLDIQIDDSEHVYPMQIQGGGMNEM 563          
BLAST of CF834188 vs. ExPASy Swiss-Prot
Match: ILVB_SPIPL (Acetolactate synthase (Fragment) OS=Spirulina platensis GN=ilvY PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = -1
Query:  217 VANPDAIIVDIDGDGSFIMNVQELATIKVEKLPIKILLLNNQHLGMVMQWEDRFYKANRAHTYLGDPSRESEIFPNMLKFAEACGIPGAQVTRKADLRAAIQTMLDTPGPYLLDVIFPHQEHVLPMIPSGGAFKDVI 627
            VA+P   +  I GDGSF MN+QEL TI    + +K+++LNN  LGMV QW+  FY      T L D +      P   + A+  G+    V ++   +  +   L   GP +LDV     E   PM+  G    D++
Sbjct:  445 VAHPHDTVTCISGDGSFQMNMQELGTIAQYGIGVKVIILNNGWLGMVRQWQHMFYNDRYEATNLEDGT------PEFARLADVYGLEAMNVRQRKIYQRRLPKALSHKGPMILDVRVTRDEDCYPMVAPGHDNSDMM 575          
The following BLAST results are available for this feature:
BLAST of CF834188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
ILVB_MYCLE1.207e-1536.50Acetolactate synthase OS=Mycobacterium leprae GN=i... [more]
ILVB_MYCTU1.577e-1538.17Acetolactate synthase OS=Mycobacterium tuberculosi... [more]
ILVB_MYCBO1.577e-1538.17Acetolactate synthase OS=Mycobacterium bovis GN=il... [more]
ILVI_BUCAI2.060e-1533.81Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVI_ECOLI2.690e-1531.97Acetolactate synthase isozyme 3 large subunit OS=E... [more]
ILVB_MYCAV2.690e-1538.17Acetolactate synthase OS=Mycobacterium avium GN=il... [more]
ILVB_LACLA5.992e-1534.62Acetolactate synthase large subunit OS=Lactococcus... [more]
ILVI_BUCAP1.743e-1433.09Acetolactate synthase large subunit OS=Buchnera ap... [more]
ILVB_SPIPL2.974e-1433.58Acetolactate synthase (Fragment) OS=Spirulina plat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834188 ID=CF834188; Name=CF834188; organism=Citrus sinensis; type=EST; length=627bp
TTTTTTTTTTCCTTTTTAAATAACATTGTAACTCATAGAGTTTGTTTGTT
AAACAAACACTAGTTCCATTAAAACTGACACCTGAACTAAAAACACTGCC
ACACACTCATAGGTAAGTTAAGCCTGCAACTCAAAAGGAACATAAATACA
TAGCCAAGAAGGCATCTATGCTGCTTCAGCTTGTCGTTAATACTGTGTTC
TTCCATCACCTTCAGTTATCACATCTTTAAAAGCTCCACCACTGGGGATC
ATAGGCAGGACATGCTCTTGATGAGGAAAGATGACGTCCAGAAGGTATGG
TCCAGGAGTGTCCAACATAGTCTGAATTGCGGCTCTCAGATCTGCCTTCC
TTGTTACTTGTGCTCCAGGTATTCCACAGGCTTCTGCAAACTTCAACATA
TTCGGAAATATTTCAGACTCTCTTGATGGATCTCCCAAATACGTGTGAGC
CCTATTTGCCTTGTAAAACCGATCCTCCCATTGCATCACCATGCCCAAGT
GCTGATTATTCAACAGCAATATCTTGATGGGGAGTTTCTCTACCTTAATA
GTCGCCAACTCCTGGACGTTCATGATGAAACTCCCATCACCATCAATATC
TACAATGATGGCATCAGGATTTGCAAC
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