CF834190

Overview
NameCF834190
Unique NameCF834190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.237e-54
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP G KKFETLSYLP L D  L KE+ +L+R GWIPCLEFELE G+V+REH++SP Y DGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:   52 RVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.146e-54
Identity = 91/126 (72.22%), Postives = 110/126 (87.30%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ +L+++GW+PCLEFE E G+V+RE+HKSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV CM+VWPP  +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E G+V+RE+HKSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 93/126 (73.81%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV CM+VWPP  +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E G+V+RE+HKSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.064e-53
Identity = 93/126 (73.81%), Postives = 112/126 (88.89%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            R++CM+VWP  G+KKFETLSYLPPLS EALLK++++LIRS W+PCLEF  + G+VFREH+ SPGY DGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   44 RIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.815e-53
Identity = 91/124 (73.39%), Postives = 105/124 (84.68%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RVQCM+VWPP G KKFETLSYLPPLSD  LL ++ +L+  GWIPC+EFELE  +V+RE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA KP
Sbjct:   57 RVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 95/126 (75.40%), Postives = 109/126 (86.51%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCMKVWP  G+KKFETLSYLP + DEAL+K+I +L+RS WIPCLEF   KG+V+RE+H+SPGY DGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RVQCM+VWP TG KKFETLSYLP L D  L KE+ +L+R GWIPCLEFELE G+V+RE+H+SPGY DGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 95/125 (76.00%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RVQCMKVWPP GL+KFETLSYLPPLS E+L K+I +LI  GWIPCLEFELE  +V+RE+++SPGY DGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISFIA KPP
Sbjct:   56 RVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 92/124 (74.19%), Postives = 106/124 (85.48%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV+CM VWPP   KK+ETLSYLP LSDE LLKEI +L++ GW+PCLEFE E G+V+REHH+SPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP
Sbjct:   54 RVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS1_SOYBN6.237e-5473.81Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_SOLTU8.146e-5472.22Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3B_SOLLC1.064e-5373.81Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.064e-5373.81Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2_WHEAT1.064e-5373.81Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS2_AMAHP1.815e-5373.39Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MUSAC2.370e-5375.40Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO2.370e-5373.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FAGCR2.370e-5376.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN2.370e-5374.19Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTAAAGGATTCAATTATTAAAATATATACCTTAAA
AAAAAAAAGAAGCCAAAGTCGGGGAGAAAACCAAACATGTTTGAGCAGCA
GCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATC
GAATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATG
GGGGGTTACACAAATTTAATTGGGAACCTAAACGCCTGGGGGCTTGGCAG
CAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATT
CGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAA
AACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCC
AGTAGCGTCCATCGGAGTATCCTGGTGACTTGTGGTGCTCACGGAACACC
CATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGAT
AAGGAAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
ATGAAAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATG
CATTGGACTCTT
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