CF834190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2) HSP 1 Score: 207.223 bits (526), Expect = 5.280e-53 Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -2 Query: 237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611 RV CMKVWPP G KKFETLSYLP LSD L KE+++L+R+ WIPC+EFELE G+V+REH +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP Sbjct: 52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53 Identity = 90/124 (72.58%), Postives = 108/124 (87.10%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VWPP G KKFETLSYLPPL++E L KE+ +LIR GWIPCLEFELEKG+V+RE+H+SPGY DGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA P Sbjct: 54 RVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53 Identity = 92/126 (73.02%), Postives = 108/126 (85.71%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RV CM+VWPP +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53 Identity = 92/126 (73.02%), Postives = 111/126 (88.10%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G+KKFETLSYLPPLS EAL K++++LIRS W+PCLEF + G+VFREH+ SPGY DGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG Sbjct: 43 RIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53 Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = -2 Query: 237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611 RV CMKVWPP G KKFETLSYLP LSD L KE+++L+R+ WIPC+EFELE G+V+REH +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISFIA KPP Sbjct: 52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53 Identity = 88/126 (69.84%), Postives = 110/126 (87.30%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCMKVWPP GLKK+ETLSYLPPL++ L KE+++L+R W+PCLEFELE G+V+RE+ +SPGY DGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G Sbjct: 52 RVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53 Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RV+CM+VWPP +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E+G+V+RE++ SPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.176e-52 Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = -2 Query: 237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611 RV CMKVWPP G KKFETLSYLP L+D L KE+++L+R+ WIPC+EFELE G+V+REH +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP Sbjct: 52 RVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.536e-52 Identity = 90/126 (71.43%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCM+VWPP KK+ETLSYLP LS+E LL+E+ +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 55 RVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1) HSP 1 Score: 205.682 bits (522), Expect = 1.536e-52 Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RV+CM+VWPP +KK+ETLSYLP LSDE LLKE+ +L+++GW+PCLEFE E G+V+REH+ SPGY DGRYWTMWKLPM+GCTD TQVL EV E + YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180 The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bpback to top |