CF834190

Overview
NameCF834190
Unique NameCF834190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 5.280e-53
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RV CMKVWPP G KKFETLSYLP LSD  L KE+++L+R+ WIPC+EFELE G+V+REH  +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53
Identity = 90/124 (72.58%), Postives = 108/124 (87.10%), Query Frame = -2
Query:  240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611
            RV CM+VWPP G KKFETLSYLPPL++E L KE+ +LIR GWIPCLEFELEKG+V+RE+H+SPGY DGRYWTMW+LP++G TD++QVLKE+ + + EYP SF+RIIGFDN RQVQCISFIA  P
Sbjct:   54 RVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTP 177          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53
Identity = 92/126 (73.02%), Postives = 108/126 (85.71%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV CM+VWPP  +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   54 RVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 6.896e-53
Identity = 92/126 (73.02%), Postives = 111/126 (88.10%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            R++CM+VWP  G+KKFETLSYLPPLS EAL K++++LIRS W+PCLEF  + G+VFREH+ SPGY DGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   43 RIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RV CMKVWPP G KKFETLSYLP LSD  L KE+++L+R+ WIPC+EFELE G+V+REH  +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 88/126 (69.84%), Postives = 110/126 (87.30%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCMKVWPP GLKK+ETLSYLPPL++  L KE+++L+R  W+PCLEFELE G+V+RE+ +SPGY DGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:   52 RVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 9.007e-53
Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV+CM+VWPP  +KK+ETLSYLP LSDE LL EI +L+++GW+PCLEFE E+G+V+RE++ SPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.176e-52
Identity = 91/125 (72.80%), Postives = 107/125 (85.60%), Query Frame = -2
Query:  237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611
            RV CMKVWPP G KKFETLSYLP L+D  L KE+++L+R+ WIPC+EFELE G+V+REH  +PGY DGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP
Sbjct:   52 RVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.536e-52
Identity = 90/126 (71.43%), Postives = 109/126 (86.51%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.536e-52
Identity = 89/126 (70.63%), Postives = 107/126 (84.92%), Query Frame = -2
Query:  234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611
            RV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ +L+++GW+PCLEFE E G+V+REH+ SPGY DGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   55 RVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS2B_ARATH5.280e-5373.60Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS_MEDSA6.896e-5372.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2A_SOLLC6.896e-5373.02Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS1_WHEAT6.896e-5373.02Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_RAPSA9.007e-5372.80Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN9.007e-5369.84Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLLC9.007e-5372.22Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1B_ARATH1.176e-5272.80Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS2_NICSY1.536e-5271.43Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS0_SOLTU1.536e-5270.63Ribulose bisphosphate carboxylase small chain C, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05B12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bp
TTTTTTTTTTTTTTTTTAAAGGATTCAATTATTAAAATATATACCTTAAA
AAAAAAAAGAAGCCAAAGTCGGGGAGAAAACCAAACATGTTTGAGCAGCA
GCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAACCCCCATTGATC
GAATGATCATTATGGGGGTTACACATAATAATAATCAACAATATTGCATG
GGGGGTTACACAAATTTAATTGGGAACCTAAACGCCTGGGGGCTTGGCAG
CAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAAATCCGATAATT
CGGACGAATGAATGTGGGTATTCCTTCTGGACCTCCCCAACCTCCTTCAA
AACCTGGGTTGCATCTGTGCACCCATACATGGGCAGCTTCCACATTGTCC
AGTAGCGTCCATCGGAGTATCCTGGTGACTTGTGGTGCTCACGGAACACC
CATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAGCCGGAGCGGAT
AAGGAAATTGATTTCCTTGAGCAAAGCTTCATCGGACAGTGGCGGGAGGT
ATGAAAGAGTCTCGAACTTCTTCAAGCCAGTTGGTGGCCACACCTTCATG
CATTGGACTCTT
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