CF834190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.006e-52 Identity = 89/124 (71.77%), Postives = 107/124 (86.29%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ +L+R GW+PC+EFELEKG+V R+++ SPGY DGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P Sbjct: 52 RVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.006e-52 Identity = 91/126 (72.22%), Postives = 105/126 (83.33%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 +VQCMKVWP G+KKFETLSYLPPL+ E L E+ +L+RSGWIPCLEFELE G V+REH + PGY DGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P + RIIGFDN RQVQCISF+A KPPG Sbjct: 56 KVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 4.470e-52 Identity = 90/126 (71.43%), Postives = 107/126 (84.92%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCM+VWPP KK+ETLSYLP LS E LL E+ +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 54 RVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 4.470e-52 Identity = 87/124 (70.16%), Postives = 107/124 (86.29%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ +L+ +GW+PCLEFE G+V+REH +PGY DGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP Sbjct: 55 RVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 204.142 bits (518), Expect = 4.470e-52 Identity = 90/126 (71.43%), Postives = 107/126 (84.92%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCM+VWPP KK+ETLSYLP LS E LL E+ +L+++GW+PCLEFE E G+V+RE++KSPGY DGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 54 RVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 7.624e-52 Identity = 84/124 (67.74%), Postives = 111/124 (89.52%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 +VQCMKVWPP GL+KFETLSYLP +S+E L KE ++L+R+GW+PC+EF++ G+V+RE+H+SPG+ DGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP Sbjct: 56 KVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 7.624e-52 Identity = 88/126 (69.84%), Postives = 110/126 (87.30%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCMKVWPP G KK+ETLSYLP L++ L KE+++L+R+ W+PCLEFELE G+V+RE+ +SPGY DGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 52 RVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 9.958e-52 Identity = 87/126 (69.05%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCMKVWPP G KK+ETLSYLP L++ L KE+++L+R+ W+PCLEFELE G+V+RE+ SPGY DGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA+KP G Sbjct: 47 RVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 9.958e-52 Identity = 89/125 (71.20%), Postives = 107/125 (85.60%), Query Frame = -2 Query: 237 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 611 RV CMKVWPP G KKFETLSYLP L++ L KE+++L+R+ WIPC+EFELE G+V+REH +PGY DGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 52 RVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 9.958e-52 Identity = 88/126 (69.84%), Postives = 110/126 (87.30%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 RVQCMKVWPP G KK+ETLSYLP L++ L KE+++L+R+ W+PCLEFELE G+V+RE+ +SPGY DGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 47 RVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172 The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bpback to top |