CF834190
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VWPP GLKKFETLSYLPPLS E L KE+++L+R+ W+PC+EF E G+V+RE+H SPGY DGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 54 RVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VWPP GLKKFETLSYLPPLS E L KE+++L+R+ W+PC+EF E G+V+RE+H SPGY DGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 54 RVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 91/124 (73.39%), Postives = 106/124 (85.48%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RV CM+VWPP GLKKFETLSYLPPLS E L KE+++L+R+ W+PC+EF E G+V+RE+H SPGY DGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 54 RVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 91/124 (73.39%), Postives = 107/124 (86.29%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RVQCMKVWP GLKKFETLSYLP LS E+LLK+I +LIR+GW+PCLEF LE G+V R+++KSPGY DGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI KP Sbjct: 56 RVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 87/124 (70.16%), Postives = 105/124 (84.68%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ +L+ +GW+PCLEFE G+V+REH +PGY DGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP Sbjct: 52 RVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 3.784e-51 Identity = 91/124 (73.39%), Postives = 107/124 (86.29%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 RVQCMKVWP GLKKFETLSYLP LS E+LLK+I +LIR+GW+PCLEF LE G+V R+++KSPGY DGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI KP Sbjct: 56 RVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 8.430e-51 Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G+KKFETLSYLPPL+ E LLK+I +L+RS W+PCLEF + G+V+RE+H+SPGY DGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG Sbjct: 44 RIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 8.430e-51 Identity = 90/124 (72.58%), Postives = 106/124 (85.48%), Query Frame = -2 Query: 240 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 611 +V CM+VWPP GLKKFETLSYLPPLS E L KE+++L+R+ W+PC+EF E G+V+RE+H SPGY DGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 54 KVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 8.430e-51 Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G+KKFETLSYLPPL+ E LLK+I +L+RS W+PCLEF + G+V+RE+H+SPGY DGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG Sbjct: 44 RIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
BLAST of CF834190 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 8.430e-51 Identity = 91/126 (72.22%), Postives = 109/126 (86.51%), Query Frame = -2 Query: 234 RVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINFLIRSGWIPCLEFELEKGWVFREHHKSPGYSDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 611 R++CM+VWP G+KKFETLSYLPPL+ E LLK+I +L+RS W+PCLEF + G+V+RE+H+SPGY DGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG Sbjct: 44 RIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 The following BLAST results are available for this feature:
BLAST of CF834190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834190 ID=CF834190; Name=CF834190; organism=Citrus sinensis; type=EST; length=612bpback to top |